IMCF

Repositories

• snijder

  ✂️ Single Node Inhomogeneous Job Dispatcher, Executor & Reporter

  python executor scheduler queue-manager
  Python 0 1 1 0 Updated Sep 23, 2020

• hrm

  Forked from aarpon/hrm

  The Huygens Remote Manager is an open-source, efficient, multi-user web-based interface to the Huygens software by Scientific Volume Imaging for parallel batch deconvolutions.
  PHP 6 0 0 0 Updated Jul 29, 2020

• zeiss-lightsheet-bigstitcher

  Fiji script for processing zeiss lightsheet datasets using BigStitcher
  Python GPL-3.0 0 0 0 0 Updated Jul 7, 2020

• imcf-fiji-toolbars

  ☕ 🔬 🔣 Fiji Action Bars provided by the IMCF.

  imagej fiji image-processing imageprocessing
  JavaScript GPL-3.0 0 0 0 0 Updated Jan 28, 2020

• pumapy

  📑 🕙 🐍 A Python 2 package to communicate with Stratocore's PUMAPI.

  web-api python2 booking-system ppms pumapi research-facility
  Python 0 0 0 0 Updated Nov 8, 2019

• lxc-scripts

  🚚 🚧 Scripts and stuff to automatically create LXC containers in various flavours.
  Shell GPL-3.0 0 0 0 0 Updated Jul 3, 2019

• jython-scijava-logging

  🐍☕📑 Jython package for using SciJava's LogService for logging.

  imagej2 scijava logging jython jython-library
  Python GPL-3.0 0 0 0 0 Updated Jun 25, 2019

• jython-olefile

  ☕ 🐍 🔬 A mavenized package of Philippe Lagadec's "olefile" Python module to be used in ImageJ2.
  Shell 0 2 0 0 Updated Jun 25, 2019

• python-imcflibs

  🐍☕🔩🔧 A collection of commonly used Python helper functions.
  Python GPL-3.0 0 0 0 0 Updated Jun 25, 2019

• python-micrometa

  ☕ 🐍 🔬 Package for processing metadata from various light-microscopy related data formats.

  imagej2 python27 jython jython-library
  Python 0 1 0 0 Updated Jun 25, 2019

• imcf-fiji-scripts

  🔧 📝 ☕ 🔬 Scripts for Fiji provided by the Imaging Core Facility, Biozentrum, University of Basel

  imagej fiji image-processing imageprocessing facility
  Python GPL-3.0 1 0 1 0 Updated Jun 25, 2019

• hrm_containerization

  🔮🔬 Installation scripts for setting up the HRM in containers. 🚚 🚧 🐳

  containers installation deconvolution lxc-containers
  Shell 0 1 0 0 Updated Jun 18, 2019

• lil-bulb

  PowerShell scripts to ease the Windows pain a bit.
  PowerShell 0 0 0 0 Updated Jun 13, 2019

• HyperStackReg

  Forked from ved-sharma/HyperStackReg

  An ImageJ / Fiji plugin for multi-channel Hyperstack alignment (registration)
  Java GPL-3.0 1 0 0 0 Updated Mar 7, 2019

• osem

  Forked from openSUSE/osem

  Open Source Event Manager. An event management tool tailored to Free and Open Source Software conferences.
  Ruby MIT 450 0 0 0 Updated Feb 26, 2019

• example-script-collection

  Forked from imagej/example-script-collection

  Example project demonstrating how to package ImageJ scripts into a single jar file
  Java 2 0 0 0 Updated Jan 29, 2019

• scijava-scripts

  Forked from scijava/scijava-scripts

  Shell scripts for scientific projects written in Java
  Shell 14 0 0 0 Updated Jan 15, 2019

• fiji_Stitching

  Forked from fiji/Stitching

  Fiji's Stitching plugins reconstruct big images from tiled input images.
  Java GPL-2.0 51 0 0 0 Updated Dec 4, 2018

• olefile

  Forked from decalage2/olefile

  olefile is a Python package to parse, read and write Microsoft OLE2 files (also called Structured Storage, Compound File Binary Format or Compound Document File Format), such as Microsoft Office 97-2003 documents, vbaProject.bin in MS Office 2007+ files, Image Composer and FlashPix files, Outlook messages, StickyNotes, several Microscopy file fo…
  Python 58 0 0 0 Updated Oct 25, 2018

• python-bioformats

  Forked from CellProfiler/python-bioformats

  Read and write life sciences file formats
  Python 33 0 0 0 Updated Oct 24, 2018

• noisee

  🔬 NoiSee: An easy-to-use ImageJ macro for measuring SNR (signal-to-noise ratio) of light microscopes.

  imagej evaluation measurements microscopy imagej-macro signal-to-noise
  Python GPL-3.0 1 0 0 0 Updated Sep 6, 2018

• auto-tx

  Official GitHub mirror of the AutoTx intelligent background transfer service.

  windows service dotnet data-transfer email-notification spooling transfer-service
  C# GPL-3.0 1 22 1 0 Updated Jul 25, 2018

• RoboSharp

  Forked from tjscience/RoboSharp

  RoboSharp is a .NET wrapper for the awesome Robocopy windows application.
  C# MIT 49 0 0 0 Updated Mar 6, 2018

• fiji

  Forked from fiji/fiji

  Fiji Is Just ImageJ
  Shell 198 0 0 0 Updated Oct 6, 2017

• cellh5

  Forked from CellH5/cellh5

  CellH5 is an HDF5 data format for cell-based assays in high-throughput microscopy, which stores high-dimensional image data along with inter-object relations in graphs.
  Python 9 0 0 0 Updated May 10, 2017

• gc3pie

  Forked from gc3pie/gc3pie

  Python libraries and tools for running applications on diverse Grids and clusters
  Python 21 0 0 0 Updated Apr 29, 2017

• omero-user-scripts

  Forked from ome/omero-user-scripts

  Plugins for OMERO
  Python GPL-2.0 41 0 0 0 Updated Oct 18, 2016

• ome_scripts

  Forked from ome/omero-scripts

  Extracted OmeroPy/scripts directory for local modifications.
  Python 19 0 0 0 Updated Oct 9, 2016

• hrm_tests

  Infrastructure to test the Huygens Remote Manager.
  Shell 0 0 0 0 Updated Jun 21, 2016

• hrm_docs

  Forked from aarpon/hrm_docs

  Huygens Remote Manager documentation
  2 0 0 0 Updated Feb 12, 2016