singularity-containers

Here are 42 public repositories matching this topic...

nextflow-io / nextflow

A DSL for data-driven computational pipelines

docker groovy aws cloud bioinformatics pipeline nextflow hpc reproducible-research workflow-engine slurm pipeline-framework sge singularity reproducible-science dataflow singularity-containers

Updated Aug 13, 2020
Groovy

singularityhub / singularityhub.github.io

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Container tools for scientific computing! Docs at https://singularityhub.github.io/singularityhub-docs

registry website documentation containers container hub singularity-containers

Updated May 29, 2020
HTML

singularityhub / sregistry

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server for storage and management of singularity images

registry containers management singularity singularity-containers singularityhub

Updated Aug 12, 2020
JavaScript

singularityhub / singularity-python

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command line tool for working with singularity hub and singularity containers

linux hpc containers container singularity-containers

Updated Aug 7, 2020
Python

NIH-HPC / singularity-examples

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example singularity definition files and demos

singularity-containers

Updated Jun 14, 2018
Shell

intel / HPC-containers-from-Intel

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Intel HPC Containers using Singularity

cloud hpc cluster singularity-containers

Updated Apr 5, 2019
Shell

mbhall88 / Singularity_recipes

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Repository with all my Singularity recipes

bioinformatics nanopore singularity singularity-containers singularity-hub

Updated May 14, 2020

vsoch / singularity-scientific-example

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example analysis with Singularity Hub and Docker containers run on local HPC and cloud providers

aws ec2 genomics hpc singularity gce singularity-containers google-compute

Updated Aug 10, 2017
Jupyter Notebook

sci-f / sci-f.github.io

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The Scientific Filesystem Specification and Documentation

science containers singularity reproducibility singularity-containers competitive

Updated Dec 9, 2019
CSS

singularityhub / stools

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singularity container tools for continuous integration and quality assessment

qa continuous-integration ci containers singularity clair scanning singularity-containers

Updated Apr 17, 2020
Python

BU-ISCIII / nextflow-scif

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This is a demo about how to develop and deploy a pipeline using nextflow, scif, a container (Singularity and Docker) and its posterior deployment.

nextflow docker-container docker-image recipe singularity singularity-containers nextflow-scif nextflow-pipelines scif-recipe nextflow-workflow

Updated Feb 25, 2019
HTML

QuentinLetourneur / Let-it-bin

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Optimize workflow for binning metagenomic short reads from multiple samples

nextflow binning singularity-containers metagenomic-analysis

Updated Mar 18, 2020
Nextflow

supercontainers / sc19-tutorial

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Getting Started with Containers on HPC

tutorial hpc containers singularity singularity-containers containerization shifter

Updated Nov 17, 2019
C

MaxUlysse / nf-core_sarek

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Analysis pipeline to detect germline or somatic variants from WGS / targeted sequencing

docker workflow bioinformatics pipeline genomics nextflow cancer reproducible-research next-generation-sequencing singularity reproducible-science singularity-containers

Updated Aug 6, 2020
Nextflow

vsoch / tunel

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command line tool for general HPC functions using Singularity containers

python flask containers singularity container-management singularity-container singularity-containers

Updated May 1, 2017
CSS

jlboat / BioinfoContainers

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Various Singularity recipes I've used to generate containers

bioinformatics singularity-containers singularityhub sigularity

Updated Sep 13, 2019

singularityhub / builders

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these are the build scripts run by the robot builders, chosen by the user for a given build

builder tools container singularity singularity-containers

Updated Mar 22, 2018
CSS

kinow / cylc-singularity

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Singularity containers for Cylc

docker workflow containers scheduler singularity singularity-container singularity-containers cylc

Updated Dec 29, 2019
Roff

CHRUdeLille / vep_containers

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VEP environments containerized for singularity

recipes singularity singularity-containers singularity-hub ensembl-vep

Updated Aug 23, 2018
Shell

sci-f / apps

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Modular application recipes for the Scientific Filesystem (SCIF)

apps singularity open-science singularity-container singularity-containers scientific-containers sci-f

Updated Apr 10, 2020
CSS

vsoch / singularity-nginx

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web application to serve (simple) singularity images

nginx singularity singularity-container singularity-containers

Updated Mar 19, 2017
Python

Smahane / HPC-Container

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Some HPC Singularity containers

cloud hpc cluster singularity singularity-containers

Updated May 7, 2018
Shell

vistle / singularity

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Singularity containers for running COVISE, OpenCOVER, and Vistle

visualization hpc singularity-containers

Updated Feb 10, 2020
Makefile

CHRUdeLille / nextflowgularity

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Nextflow + Singularity environments containerized

recipes nextflow singularity singularity-containers singularity-hub

Updated Aug 2, 2018
Dockerfile

singularityware / eb-singularity

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Stuff related to integrating EasyBuild & Singularity

hpc containers singularity singularity-containers easy-build

Updated Jul 13, 2017

sci-f / flavours-of-physics.scif

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containers-ftw version of https://www.kaggle.com/c/flavours-of-physics

competition containers physics singularity-containers tau mu containers-ftw

Updated Sep 18, 2017
Python

singularityhub / neurodebian

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Singularity Images for neurodebian

singularity-container singularity-containers neurodebian

Updated Feb 17, 2017

researchapps / graspit

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singularity image for graspit with python 3

singularity singularity-containers

Updated Mar 5, 2017
Shell

ArangoGutierrez / singularity-builder

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Singularity builder to build, install, and update Singularity software on different platforms

linux continuous-integration singularity-containers

Updated May 19, 2017
Shell

JFresnedo / AmpSeq

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A framework for semi-automated analysis of Amplicon Sequencing data

bioinformatics bioinformatics-pipeline bioinformatics-data singularity-containers bioinformatics-containers bioinformatics-scripts singularity-hub

Updated Sep 19, 2019
Perl

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