Generic Model Organism Database Project

Repositories

• jbrowse-components

  Monorepo with JBrowse 2 web, JBrowse 2 desktop, and more.
  TypeScript 7 10 214 9 Updated Aug 27, 2020

• Apollo3Server

  Apollo 3 Server: Grails 4 + Neo4j 3.5 + JB2
  Groovy 0 0 13 1 Updated Aug 26, 2020

• GenomeFeatureComponent

  Forked from nathandunn/GenomeFeatureComponent

  Provides SVG View for Genome Features rendered with the Apollo Track Web Service from JBrowse data React Component
  JavaScript 7 1 12 7 Updated Aug 26, 2020

• Apollo

  Genome annotation editor with a Java Server backend and a Javascript client that runs in a web browser as a JBrowse plugin.

  groovy apollo grails gwt jbrowse genome-annotation-editor jbrowse-plugin
  Groovy 67 87 215 (5 issues need help) 0 Updated Aug 26, 2020

• bam-js

  Parse BAM and BAM index files in javascript for node and the browser
  JavaScript MIT 2 8 8 4 Updated Aug 19, 2020

• jbrowse

  A modern genome browser built with JavaScript and HTML5.

  bioinformatics genomics biology genome-annotation genome-browser protein-annotation
  JavaScript LGPL-2.1 189 372 152 (18 issues need help) 14 Updated Aug 19, 2020

• tabix-js

  Read Tabix-indexed files, either with .tbi or .csi indexes, in node or the browser
  TypeScript MIT 2 6 2 4 Updated Aug 17, 2020

• generic-filehandle

  use a subset of the NodeJS promise-based file handle API to access both local and remote files
  TypeScript 2 2 6 1 Updated Aug 17, 2020

• nclist-js

  Read JBrowse v1 nested containment list feature stores from modern JS
  JavaScript MIT 0 0 0 4 Updated Aug 13, 2020

• jbrowse-plugin-gdc

  JBrowse 2 plugin for integrating with GDC resources
  JavaScript 1 1 0 1 Updated Aug 7, 2020

• bgzf-filehandle

  Nodejs filehandle for reading bgzip+.gzi compressed files
  JavaScript MIT 1 3 2 1 Updated Aug 5, 2020

• sars-cov-2-jbrowse

  Repo for storing dockerfile and config for a coronavirus genome browser
  Dockerfile MIT 2 1 1 0 Updated Aug 5, 2020

• cram-js

  Read CRAM v3 and v2 in node or in the browser

  genomics
  JavaScript MIT 5 10 2 2 Updated Jul 30, 2020

• jbrowse-registry

  JBrowse Plugin Registry
  HTML BSD-2-Clause 8 14 0 0 Updated Jul 30, 2020

• vcf-js

  High performance VCF parser in pure JavaScript
  JavaScript MIT 1 2 2 1 Updated Jul 22, 2020

• indexedfasta-js

  Read FASTA files indexed with .fai indexes. Also supports BGZIP+.gzi
  JavaScript MIT 1 4 3 2 Updated Jul 16, 2020

• bbi-js

  Parser for bigwig and bigbed files
  TypeScript MIT 1 3 7 3 Updated Jul 16, 2020

• twobit-js

  Read .2bit files with pure JS. Works in node or webpack.
  JavaScript MIT 1 3 2 15 Updated Jul 16, 2020

• gff-js

  parse and format streams of GFF3, for node or webpack

  genomics
  JavaScript MIT 1 5 1 7 Updated Jul 16, 2020

• jblast-jbconnect-hook

  JBrowse/Galaxy-Blast Plugin
  CSS LGPL-2.1 0 4 33 4 Updated Jul 16, 2020

• ucsc-hub-js

  read and write UCSC track and assembly hub files in node or the browser
  JavaScript MIT 0 2 4 9 Updated Jul 9, 2020

• bed-js

  A parser for the BED format including autoSql support
  JavaScript 0 1 2 1 Updated Jul 9, 2020

• tribble-index-js

  Read htsjdk tribble indexes in pure JS
  JavaScript MIT 0 0 4 0 Updated Jun 18, 2020

• binary-parser

  Forked from rbuels/binary-parser

  A fork of binary-parser for usage in GMOD data parsers
  JavaScript MIT 84 1 1 7 Updated Jun 2, 2020

• Chado

  the GMOD database schema
  PLpgSQL 18 20 47 8 Updated May 19, 2020

• jbconnect

  JBConnect, an optional server-side component of JBrowse
  JavaScript LGPL-2.1 0 1 36 0 Updated May 16, 2020

• primer3-jbconnect-hook
  JavaScript LGPL-2.1 0 0 0 0 Updated May 13, 2020

• demo-jbconnect-hook
  JavaScript LGPL-2.1 0 0 1 0 Updated May 13, 2020

• chado_tools

  Chado data loaders and other tools
  Perl 0 0 2 0 Updated Oct 30, 2019

• docker-apollo Archived

  Forked from hdzierz/docker-webapollo2

  🐳 Apollo 2.X Docker Image

  docker bioinformatics apollo annotation genome biocuration chado
  Shell GPL-3.0 14 9 0 1 Updated Jun 18, 2019