Brain Modeling Toolkit

Simulator optimized for large scale neural network simulations.

📝 Manage your Zettelkasten in {n}vim.

A Python interface for ABF files

NeuroAnatomy Toolbox: An R package for the (3D) visualisation and analysis of biological image data, especially tracings of single neurons.

Probabilistic question-asking system: the program asks, the users answer. The minimal goal of the program is to identify what the user needs (a target), even if the user is not aware of the existence of such thing/product/service. The maximal goal is to achieve the processing power of a single neuron of a human brain on a single PC. Interactions with billions of other computers should achieve human-level intelligence (AGI).

Large scale 3D Neuron Tracing/Neuron reconstruction in Python for 3D microscopic images powered by the Rivulet2 algorithm. Pain-free Install & use in 5 mins. Also works for general centreline-extraction tasks with mhd images.

Short undergraduate course taught at University of Pennsylvania on computational and theoretical neuroscience. Provides an introduction to programming in MATLAB, single-neuron models, ion channel models, basic neural networks, and neural decoding.

The nicest neuron simulator out there. Very fast (written in C++). Flexible (fully object oriented). Immediate (live manipulation in MATLAB). Comes with a powerful parameter optimizer. Get started ➡️

A virtual optogenetics laboratory

A python and C++ library for reading and writing neuronal morphologies

Collection of Python 3 tools to work with neuron data from CATMAID servers

📊 Gene expression in neuroexpresso database

NEURON User Interface

Tutorial for understanding how to use NEURON simulation environment

T2N is an extension of the TREES toolbox providing an interface between Matlab and the compartmental modeling environment NEURON. It was published in (and should be cited this way): Beining M, Mongiat, LA, Schwarzacher SW, Cuntz H, Jedlicka P: T2N as a new tool for robust electrophysiological modeling demonstrated for mature and adult-born dentate granule cells. eLife 2017; 6:e26517

Brilliantly Radical Artificially Intelligent Neural Machine

Python tools to interact with Google brainmaps API

Plot, edit, generate and analysis neuron morphologies! and a lot more...

LPU class with support for various neuron and synapse models

Implementing Artificial Neural Network training process in Python

Using machine learning to control electrodes

Auto-generate a Table of Contents for your Neuron Zettelkasten.

Simulate the signals of brain.

Simple golang error handling with classification primitives.

Network of neural | SLP, MLP

Hybrid dynamical systems modeling.

Simple model of artificial Neuron

The memristive schematic implementation for spinal cord segment

Hardware implementation of a basic Neuron in NN