Databio

Repositories

• yacman

  YAML configuration manager
  Python BSD-2-Clause 1 3 8 1 Updated Jun 11, 2021

• pepatac

  A modular, containerized pipeline for ATAC-seq data processing
  Python BSD-2-Clause 7 32 23 0 Updated Jun 10, 2021

• peppro

  A modular, containerized pipeline for PRO-seq data processing
  Python BSD-2-Clause 0 6 8 0 Updated Jun 10, 2021

• bdshack19

  Coordinating the 2019 Biomedical Data Science Hackathon at UVA
  Jupyter Notebook 2 3 8 7 Updated Jun 9, 2021

• GenomicDistributions

  Calculate and plot distributions of genomic ranges
  R 4 17 13 0 Updated Jun 4, 2021

• bulker

  Manager for multi-container computing environments

  docker reproducible-research containers environments
  Jupyter Notebook BSD-2-Clause 1 12 15 1 Updated Jun 3, 2021

• bbconf

  Configuration package for bedbase project

  config-management python-api
  Python BSD-2-Clause 1 1 1 0 Updated Jun 2, 2021

• hub.bulker.io

  Bulker registry
  HTML BSD-2-Clause 0 3 2 0 Updated May 27, 2021

• bedhost-ui
  JavaScript 0 0 5 0 Updated May 27, 2021

• awesome-atac-analysis

  Links to ATAC-seq analysis tools
  2 24 0 0 Updated May 25, 2021

• bedshift

  Bedfile perturbation tool

  region-of-interest genomic-regions genomic-intervals
  Python BSD-2-Clause 2 9 2 0 Updated May 24, 2021

• sciquill

  Author academic documents in markdown

  markdown academic-publishing cv-template
  TeX 4 7 0 0 Updated May 21, 2021

• unitar

  Targets that span projects
  R 0 9 2 0 Updated May 21, 2021

• git-and-github-fundamentals-nsheff

  git-and-github-fundamentals-nsheff created by GitHub Classroom
  0 0 0 0 Updated May 21, 2021

• bedmaker

  pipeline to convert bigWig, bedGraph and other file types into BED format
  Python 0 0 1 1 Updated May 17, 2021

• pepatac_paper_data

  Information on reproducing plots from the PEPATAC paper
  R 0 1 0 0 Updated May 17, 2021

• pypiper

  Python toolkit for building restartable pipelines

  python bioinformatics pipeline bioinformatics-pipeline python-toolkit
  Python BSD-2-Clause 9 32 33 1 Updated May 11, 2021

• unitar_resources_demo
  R 0 0 0 0 Updated May 6, 2021

• bedbuncher

  A pipeline for bedsets
  Python 0 1 0 1 Updated Apr 29, 2021

• bedstat

  pipeline for obtaining statistics about bed files
  Python 1 1 3 1 Updated Apr 29, 2021

• projectInit

  R project initialization
  R 1 2 3 1 Updated Apr 27, 2021

• regionset-embedding
  Jupyter Notebook 0 0 0 0 Updated Apr 26, 2021

• loadr

  Cleaner R workspaces
  R 0 3 0 0 Updated Apr 19, 2021

• simpleCache

  Simplified R caching for reproducible big data projects
  R 5 30 12 1 Updated Apr 19, 2021

• schema.databio.org

  Repository of JSON-schemas
  HTML BSD-2-Clause 1 1 1 0 Updated Apr 15, 2021

• bedshift_analysis
  Python 0 0 0 0 Updated Apr 14, 2021

• COCOA

  Annotating epigenetic variation among samples with region sets in R

  pca dna-methylation
  R 0 9 12 0 Updated Apr 9, 2021

• henge

  Keeper of druids: a python interface to Decomposable Recursive UIDs
  Python BSD-2-Clause 0 1 0 1 Updated Apr 7, 2021

• sciquill_paper_example
  TeX 0 0 0 0 Updated Mar 8, 2021

• ppqc

  QC samples for PEPPRO pipeline
  1 1 1 0 Updated Feb 10, 2021