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neuroimaging

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Jing-He
Jing-He commented Jul 25, 2018

In augmentation, elastic_transform, it only applies a random transform on one input image array. I would think to be used for training, the image and mask pair should be transform in the same way. However, this single-input-image, single-output-image method makes it very inconvenient. Could we deform a list of images (np.arrays) using the same transformation in this method ? Thanks!

thomasbazeille
thomasbazeille commented Sep 16, 2020

Following #2415, two points that were not tackled inside #2476 in the interest of short cycles

  • Add a section in 2.1 on how to determine chance with a Decoder API (waiting for #2147)
  • Rethink 2.2 section on OVO vs OVA, not sure it is useful as Decoder doesn't provide this flexibility easily. But show how to plot a confusion matrix using Decoder on a simple example.

DIPY is the paragon 3D/4D+ imaging library in Python. Contains generic methods for spatial normalization, signal processing, machine learning, statistical analysis and visualization of medical images. Additionally, it contains specialized methods for computational anatomy including diffusion, perfusion and structural imaging.

  • Updated Oct 16, 2020
  • Python
spujol
spujol commented Sep 23, 2020

An Annotation window appears when clicking on the screenshot icon in the top banner.

An empty Annotation window remains after clicking on OK to create the screenshot.

Slicer4.110.0-2020-09-10 on MacOSX 10.14.16

Screen Shot 2020-09-23 at 2 36 59 PM

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