Global Alliance for Genomics and Health

Repositories

• vrs

  Extensible specification for representing and uniquely identifying biological sequence variation

  bioinformatics genomics variation
  Jupyter Notebook Apache-2.0 19 47 13 0 Updated Jul 5, 2021

• gh-openapi-docs

  Package for building OpenAPI schema docs and UI for gh-pages
  JavaScript Apache-2.0 3 6 16 7 Updated Jul 5, 2021

• data-repository-service-schemas

  A repository for the schemas used for the Data Repository Service.
  Python Apache-2.0 39 42 48 18 Updated Jul 5, 2021

• tool-registry-service-schemas

  APIs for discovering genomics tools, their metadata and their containers

  api workflow tool wdl ga4gh cwl
  Shell Apache-2.0 15 21 13 (1 issue needs help) 17 Updated Jul 5, 2021

• fasp-scripts
  Jupyter Notebook Apache-2.0 2 7 11 0 Updated Jun 30, 2021

• seqcol-spec

  Website for DRAFT specification docs for GA4GH Sequence Collections.

  collection digest fasta sequence
  HTML 1 4 13 2 Updated Jun 30, 2021

• vrs-python

  GA4GH Variation Representation Python Implementation

  bioinformatics genomics ga4gh
  Jupyter Notebook Apache-2.0 8 24 0 1 Updated Jun 28, 2021

• task-execution-schemas
  Apache-2.0 20 51 21 6 Updated Jun 28, 2021

• ga4gh-starter-kit-docs

  Static documentation site for the public facing GA4GH Starter Kit website

  starter-kit
  Apache-2.0 1 0 0 0 Updated Jun 28, 2021

• vrs-protobuf

  A framework for translating the VRS schema elements to Google Protocol Buffers
  Python MIT 0 0 0 0 Updated Jun 27, 2021

• ga4gh-starter-kit-drs

  Open, extensible server implementation of the GA4GH Data Repository Service (DRS) specification

  starter-kit
  Java Apache-2.0 4 0 3 2 Updated Jun 23, 2021

• ga4gh-starter-kit-common

  Common utils library for GA4GH Starter Kit web services

  starter-kit
  Java Apache-2.0 1 0 0 0 Updated Jun 23, 2021

• ga4gh-starter-kit-wes

  Starter Kit server implementation of the GA4GH Workflow Execution Service (WES) specification

  starter-kit
  Apache-2.0 1 0 0 1 Updated Jun 21, 2021

• data-security
  11 16 1 4 Updated Jun 16, 2021

• htsget-refserver

  Reference server implementation for the GA4GH HTSget API standard.

  htsget
  Go Apache-2.0 4 6 4 2 Updated Jun 16, 2021

• ga4gh-starter-kit-ui

  Serves user interface for GA4GH starter kit microservices
  JavaScript Apache-2.0 2 0 4 0 Updated Jun 8, 2021

• refget-cloud

  AWS serverless implementation of the refget service

  ga4gh refget
  Python Apache-2.0 0 2 0 6 Updated Jun 2, 2021

• htsget-compliance

  Compliance testing for htsget deployments
  Python Apache-2.0 2 1 0 3 Updated Jun 2, 2021

• ga4gh-drs-client

  Retrieve omics data and metadata from DRS-compliant web services
  Python MIT 0 4 0 5 Updated Jun 2, 2021

• refget-compliance-suite

  Repository for the Google Summer of Code for the Reference Retrieval API

  ga4gh gsoc-2018 retrieval-api
  Python Apache-2.0 3 6 0 4 Updated Jun 1, 2021

• cloud-interop-testing

  Interoperable execution of workflows using GA4GH APIs

  workflow wdl ga4gh cwl
  Python Apache-2.0 8 9 42 1 Updated May 19, 2021

• machine-readable-consent-guidance

  Machine Readable Consent Guidance
  Apache-2.0 0 0 0 0 Updated May 18, 2021

• vrsatile

  VRS Added Tools for Interoperable Loquacious Exchange
  Apache-2.0 0 0 6 0 Updated May 12, 2021

• TASC

  TASC aids the harmonisation of aspects of GA4GH's various products that would otherwise prevent different products from being used together conveniently.

  harmonisation technical-alignment
  6 3 13 3 Updated May 12, 2021

• ga4gh-bed

  The browser extensible data (BED) file format describes genomic intervals on chromosomes or scaffolds
  Apache-2.0 2 0 0 2 Updated May 6, 2021

• ga4gh-starter-kit

  Configurable Starter Kit web service, deploy multiple GA4GH services of interest as a single application

  starter-kit
  Apache-2.0 1 0 0 0 Updated May 4, 2021

• va-spec

  An information model for representing variant annotations.
  0 2 69 (1 issue needs help) 0 Updated Apr 27, 2021

• htsjdk

  Forked from samtools/htsjdk

  A Java API for high-throughput sequencing data (HTS) formats.
  Java 234 0 0 0 Updated Apr 23, 2021

• ga4gh-starter-kit-passport-admin

  Admin API for managing GA4GH Passport users, visas, and assertions. Part of the GA4GH Starter Kit.

  starter-kit
  Apache-2.0 1 0 0 0 Updated Apr 13, 2021

• w3id.org

  Forked from perma-id/w3id.org

  Forwarding links and rewrite rules for w3id.org
  HTML 662 2 0 0 Updated Apr 6, 2021