Harvard Medical School - Department of Biomedical Informatics

Repositories

• avillachlab-jenkins-dev-release-control
  Apache-2.0 1 0 0 0 Updated Sep 17, 2020

• avillachlab-secure-infrastructure
  TSQL Apache-2.0 1 1 0 0 Updated Sep 17, 2020

• pic-sure-hpds-ui
  JavaScript 0 0 0 1 Updated Sep 17, 2020

• gehlenborglab-website

  Code for Gehlenborg Lab website.

  website gehlenborglab
  HTML MIT 10 4 3 7 Updated Sep 16, 2020

• Access-to-Data-using-PIC-SURE-API
  Jupyter Notebook Apache-2.0 3 3 0 1 Updated Sep 16, 2020

• OncoThreads

  OncoThreads longitudinal cancer genomics visualization project.

  data-visualization cancer-genomics gehlenborglab
  JavaScript MIT 1 6 6 1 Updated Sep 16, 2020

• baseline-pic-sure-release-control
  1 0 0 4 Updated Sep 16, 2020

• cistrome-explorer

  HiGlass wrapper component, with features for cistrome data visualization

  higlass gehlenborglab
  JavaScript 0 2 54 5 Updated Sep 16, 2020

• drugseqr

  GUI to explore and combine scRNA-seq data and search CMAP02/L1000 compounds that oppose gene expression signatures.
  R 0 1 11 0 Updated Sep 15, 2020

• viv

  Library for multiscale visualization of high-resolution multiplexed tissue data on the web. Directly renders Bio-Formats-compatible Zarr and OME-TIFF.

  imaging ome-tiff openmicroscopy gehlenborglab zarr hubmap
  JavaScript MIT 1 46 64 (1 issue needs help) 3 Updated Sep 15, 2020

• vizarr

  A minimal, purely client-side program for viewing Zarr-based images with Viv & ImJoy.

  gehlenborglab zarr
  TypeScript MIT 4 13 3 0 Updated Sep 15, 2020

• udn-cli

  UDN CLI
  Python 1 2 0 1 Updated Sep 14, 2020

• pic-sure-pmsdn-release-control
  0 0 0 0 Updated Sep 14, 2020

• pic-sure-ssc-release-control
  1 0 0 0 Updated Sep 14, 2020

• genocat

  Genomic Visualization Catalog

  gehlenborglab
  HTML MIT 4 8 1 4 Updated Sep 13, 2020

• pic-sure-pmsdn

  customizations and overrides for pmsdn
  JavaScript 0 0 0 0 Updated Sep 12, 2020

• pic-sure-jupyter-widgets

  Set of widgets to be used in Jupyter notebooks
  JavaScript 0 0 0 4 Updated Sep 12, 2020

• vitessce-grid

  Simplified wrapper for react-grid-layout
  JavaScript MIT 0 0 1 2 Updated Sep 11, 2020

• pic-sure-auth-microapp
  Java 3 1 1 3 Updated Sep 11, 2020

• pic-sure-precisionlink-release-control

  Release control repository for Precisionlink project
  2 0 0 0 Updated Sep 11, 2020

• dropEst

  Pipeline for initial analysis of droplet-based single-cell RNA-seq data

  pipeline scrna-seq preprocessing single-cell-rna-seq
  C++ GPL-3.0 28 59 26 (1 issue needs help) 0 Updated Sep 11, 2020

• pic-sure-js-client

  PIC-SURE Client library written in Javascript
  JavaScript 0 0 0 4 Updated Sep 10, 2020

• ppm-utils

  PPM Service Utilities
  Python 0 0 0 0 Updated Sep 10, 2020

• dbmi-fileservice
  Python 0 0 0 1 Updated Sep 10, 2020

• pic-sure-all-in-one
  Shell 3 0 0 5 Updated Sep 9, 2020

• BDC_HarmonizedVars_PheWAS

  PheWAS analysis study using harmonized variables on BDC
  Python Apache-2.0 0 0 0 0 Updated Sep 6, 2020

• pic-sure

  PIC-SURE API
  Java Apache-2.0 1 2 0 1 Updated Sep 2, 2020

• avillachlab-pic-sure-splunk-template

  Dashboard templates for Splunk 8.0
  2 0 0 0 Updated Sep 1, 2020

• pic-sure-udn

  pic-sure ui for udn
  JavaScript 1 0 0 0 Updated Sep 1, 2020

• pic-sure-hpds
  Java 3 2 0 3 Updated Sep 1, 2020