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LorenzE
LorenzE commented Feb 10, 2020

"Start recording" button should change its name to "Stop recording" once clicked. This needs to be changed for all MNE Scan plugins which are able to record data, see below.

https://github.com/mne-tools/mne-cpp/blob/0273dc540f2a5597d3317edbf76b6169fab94021/applications/mne_scan/plugins/neuromag/neuromag.cpp#L269

https://github.com/mne-tools/mne-cpp/blob/0273dc540f2a5597d3317edbf76b6169fab940

TomRhysMarshall
TomRhysMarshall commented Aug 6, 2020

Hi,

Very simple issue. When you start up HNN two windows appear ('param' and 'model schematics'), plus a little dialogue box that says 'Welcome to HNN! Default parameter file loaded. Press 'Run simulation' to display simulation output.' with a little 'run' button on it.

First time I started HNN that dialogue box opened offscreen, so I didn't know it was there. Because I didn't click 'run', n

Remi-Gau
Remi-Gau commented Nov 1, 2020

What am I supposed to do with this bunch of JSON files?

The obviously missing piece from this project is part that allows converting the ouput of the app into a human readable method section any researcher can copy into their article.

The goal of this sub-project is to create some prototype scripts to:

  • extract the relevant content from the JSON files one can download from the web a

Analysis scripts for group analysis of MEG data in both Python and MATLAB associated with Andersen, L.M., 2018. Group Analysis in MNE-Python of Evoked Responses from a Tactile Stimulation Paradigm: A Pipeline for Reproducibility at Every Step of Processing, Going from Individual Sensor Space Representations to an across-Group Source Space Representation. Front. Neurosci. 12. https://doi.org/10.3389/fnins.2018.00006 and Andersen, L. M. Group Analysis in FieldTrip of Time-Frequency Responses: A Pipeline for Reproducibility at Every Step of Processing, Going From Individual Sensor Space Representations to an Across-Group Source Space Representation. Front. Neurosci. 12, (2018). https://10.3389/fnins.2018.00261

  • Updated Mar 10, 2020
  • MATLAB
jasmainak
jasmainak commented Dec 22, 2020

We discovered that tstop needs to be handled better. In particular,

  1. event_times beyond tstop should be truncated
  2. tstop should be passed passed explicitly to simulate_dipole

@kohl-carmen this might be a good issue for you. 2. is pretty similar to what you did with postproc. 1. might need some thinking

These C/C++ source files consist of 150 classes, 300,000 lines of code, excluding a Qt-based user interface. Its functionality includes: GLM-statistics, hierarchical clustering, (non)-linear optimization, L1 and L2 norm minimization, Hungarian algorithm, EEG/MEG forward and inverse modelling, Boundary Element Method, spatio/temporal covariance modelling, image fusion, triangular meshes, KD-trees, topological error correction, marching cubes & spherical triangulations, sparse matrices and matrix operations, spherical harmonics, wavelets, spectra and spectrograms, Fast Fourier transform (FFTWest), data import for many different EEG/MEG data formats, data import for many image data formats.

  • Updated Jan 4, 2019

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