fasta-sequences

Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data

FluentDNA allows you to browse sequence data of any size using a zooming visualization similar to Google Maps. You can use FluentDNA as a standalone program or as a python module for your own bioinformatics projects.

genomic alignment similarity search tool

Evolutionary Bioinformatics Toolkit (EBT)

Split multi fasta file into single fasta files

Shuffle the string sequences such that the k-mer frequency is preserved in each string

A naive implementation of a k-mer counter in Python, takes fasta files and k-mer length requests and outputs all k-mers of length k, their reverse complement, and their frequency within their respective sequence for each sequence in the file.

SEquence DAtaset builder

A tool for manipulating fasta files and obtaining new sequence data from NCBI in fasta format

Team Genomics One is a group of Bioinformatics enthusiasts gathered together from around the globe , to learn and move forward in solving biological myths by analyzing various types of biological data. We believe Team Work is Dream Work!!!

Computational programs and algorithms used to convert information from biochemical experiments (DNA/RNA/Protein/DNA chip/NGS) into useful information and data.

fxtools: light-weight processing tool for FASTA/FASTQ/BAM format data

A fully integrated K-mer Informed Toolkit for Bioinformatics

Sequence clustering and database creation using mmseqs, from local fasta files

Program to clean DNA fasta sequences

omicR for R studio creates fasta files, downloads genomes from NCBI using the refseq number, creates databases to run BLAST+, runs BLAST+ and filters these results to obtain the best match per sequence. These scripts can be used to run BLAST alignment of short-read (DArTseq data) and long-read sequences (Illumina, PacBio… etc). You can use reference genomes from NCBI, or any other genetic sequence that you would like to use as reference.

Creating plots using FASTA amino-acid files

Terminal App to find ORF

omicR It creates fasta files, downloads genomes from NCBI using the refseq number, creates databases to run BLAST+, runs BLAST+ and filters these results to obtain the best match per sequence. These scripts can be used to run BLAST alignment of short-read (DArTseq data) and long-read sequences (Illumina, PacBio… etc).

A small collection of one-liners in a one bash script for fasta files processing.

A tool for predicting the effects of missense mutations on protein stability changes upon missense mutation using protein sequence only.

Performs semi-global alignments on FASTA sequences. Homework 3 for Dr. Miller's Intro to Bioinformatics class.

Bioinformatics tools that could use for data analysis with protein and DNA/RNA sequence.

This script allows us to generate ORF for a given Protein Sequence.

Removes duplicate sequences in multifasta file

Idris (Idris2) port of the Haskell biofasta library.

Class for reading Protein files, specifically .fasta files and certain tab-delimited formats

A C++ library for working with FASTA files. The library structure the file as objects. A header and a sequence are stored in a block container, while the entire file is stored in a fasta container.

FastC aims to provide a simple way to do some quality control checks on treated sequence data. It is similar to FastQC allowing a comparative study between raw and processed data.