Python package and CLI for whole-genome duplication related analyses
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Dec 6, 2021 - Python
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polyploidy
Here are 13 public repositories matching this topic...
WGDI: A user-friendly toolkit for evolutionary analyses of whole-genome duplications and ancestral karyotypes
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May 25, 2022 - Python
Genetic maps in autopolyploids
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May 24, 2022 - R
Bayesian gene tree reconciliation and WGD inference using amalgamated likelihood estimation
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Jun 5, 2022 - Julia
Polyploid micro-haplotype assembly using Markov chain Monte Carlo simulation.
numpy
array
haplotypes
bayesian-inference
dna-sequences
genotyping
polyploidy
haplotype-assembly
haplotype-blocks
polyploid-genotyping
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Apr 8, 2022 - Python
Gene-tree Reconciliation Algorithm with MUL-trees for Polyploid Analysis
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Sep 17, 2021 - Python
An R package and Shiny app for interactively fitting population parameters to k-mer spectra of diploids, triploids, and tetraploids (allo and auto)
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Jan 31, 2022 - R
An R package for flow cytometry histogram analysis
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Nov 9, 2021 - R
How does disturbance on a landscape affect the establishment of new polyploid plant species?
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Mar 9, 2020 - R
Bioinformatic methods used in McElroy et al. (2021). Asexuality associated with marked genomic expansion of tandemly repeated rRNA and histone genes. Molecular Biology and Evolution.
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May 5, 2021
R scripts and data files to test the "instant speciation" hypothesis
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Jun 22, 2017 - R
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