Virtool

Repositories

• virtool

  Viral infection diagnostics using next-generation sequencing

  bioinformatics web-app diagnostics viral-ngs
  Python MIT 11 28 56 4 Updated Jan 20, 2021

• workflow-nuvs

  A workflow for identifying novel viruses in Virtool

  workflow virtool
  Python 1 0 0 0 Updated Jan 18, 2021

• workflow-build-index

  A workflow for building Virtool reference indexes

  workflow virtool
  Python 1 0 1 0 Updated Jan 18, 2021

• virtool-website

  The Virtool product website

  virtool
  Sass 3 4 3 1 Updated Jan 13, 2021

• virtool-workflow

  A framework for building Virtool workflows

  workflow virtool
  Python MIT 4 3 9 0 Updated Jan 12, 2021

• workflow-aodp

  A workflow for using amplicon analysis in Virtool using AODP

  workflow virtool
  Python 2 0 0 0 Updated Jan 11, 2021

• workflow-pathoscope

  A workflow for detecting known viruses in Virtool

  workflow virtool
  Python 2 1 0 0 Updated Dec 29, 2020

• workflow-create-subtraction

  A workflow for creating Virtool subtractions

  workflow virtool
  Python 1 0 0 0 Updated Dec 29, 2020

• workflow-create-sample

  A workflow for creating Virtool samples

  workflow virtool
  Python 1 0 1 0 Updated Dec 17, 2020

• virtool-core

  Core utilities for Virtool and associated packages

  virtool
  Python MIT 2 1 0 0 Updated Nov 26, 2020

• virtool-cli

  A command line interface for working with Virtool data

  virtool
  Python 4 1 1 0 Updated Nov 26, 2020

• ref-plant-viruses

  An official Virtool reference for plant viruses

  database genome ngs plant-viruses virtool
  Python MIT 1 1 2 1 Updated Nov 12, 2020

• virtool-ui

  A component library for Virtool

  virtool
  JavaScript 1 1 0 0 Updated Nov 6, 2020

• external-tools
  Dockerfile 0 1 0 0 Updated May 27, 2020

• virtool-contrib-guide Archived
  1 1 0 0 Updated Aug 28, 2018

• virtool-database Archived

  An official virus reference database for Virtool
  Python MIT 0 1 44 (1 issue needs help) 0 Updated Apr 26, 2018

• virtool-hmm

  Profile HMMs and annotations for Virtool and NuVs

  hmm annotations viruses virtool
  Python MIT 0 1 1 0 Updated Nov 10, 2017