ewels
Follow
Create your own GitHub profile
Sign up for your own profile on GitHub, the best place to host code, manage projects, and build software alongside 50 million developers.
Sign upPinned
3,468 contributions in the last year
Activity overview
Contribution activity
November 2020
Created 135 commits in 9 repositories
Created 3 repositories
- ewels/nf-core-eager Nextflow
- ewels/nextflow Groovy
- ewels/nf-core-testpipeline Nextflow
Created a pull request in nf-core/smrnaseq that received 11 comments
Add s3 data paths to test_full.config
Setting up full size dataset testing - see #56 PR checklist This comment contains a description of changes (with reason) If you've fixed a bug o…
+142
−50
•
11
comments
Opened 51 other pull requests in 14 repositories
nf-core/tools
19
merged
- Version bump to v1.13dev
- v1.12 dev -> master
- Version bump to 1.12
- Sphinx homepage
- Better sphinx autodocs
- Quietly install Nextflow in CI
- Update sphinx autodocs
- Switch baseDir to projectDir
- CI Docker diffs - use env.MATCHED_FILES
- Lint fail push_dockerhub.yml
- Split docker push GHA workflows, update trigger for AWS full test
- New GitHub Actions workflow to add lint results to a PR as a comment
- Fix new Branch CI GitHub Actions
- Use pull_request_target event for branch protection CI
- Don't lint for dockerfile base image if running nf-core/tools dev version
- Make some lint messages shorter
- Get GitHub issue templates working again
- Hotfix rich
- Logging - force colours if certain env vars are set.
nf-core/testpipeline
5
merged
3
closed
nf-core/methylseq
1
open
5
merged
nf-core/nf-co.re
5
merged
ewels/nf-core-testpipeline
3
closed
nf-core/hic
2
merged
nf-core/clipseq
1
open
luslab/clipseq
1
closed
nf-core/eager
1
open
ewels/nf-core-eager
1
merged
nextflow-io/nextflow
1
merged
ewels/MultiQC
1
merged
ewels/CPT-Bootstrap-Carousel
1
merged
nf-core/smrnaseq
1
merged
Reviewed 38 pull requests in 11 repositories
ewels/MultiQC 11 pull requests
ewels/MultiQC_TestData 8 pull requests
nf-core/nf-co.re 8 pull requests
- Fix soft links back button + empty directories
- schema builder: fix type conversion error for numbers as enum values
- launch: fix failed validation for non-integer inputs,
- Update issue templates
- Time did not show up correctly
- Updating event (BovReg worshop) details
- fix copy url button, add deep link sanity check, make file icons solid
- Change --reads to --input everywhere
nf-core/smrnaseq 3 pull requests
nf-core/tools 2 pull requests
nf-core/cageseq 1 pull request
nf-core/rnaseq 1 pull request
nf-core/test-datasets 1 pull request
nf-core/configs 1 pull request
nf-core/hic 1 pull request
ewels/sra-explorer 1 pull request
Created an issue in nf-core/methylseq that received 11 comments
Set up AWS megatests
AWS megatests is now running nicely and we’re trying to set up all (most) nf-core pipelines to run a big dataset. We need to identify a set of publ…
•
11
comments