Centers for Disease Control and Prevention
- Atlanta, GA
- http://open.cdc.gov/
- data@cdc.gov
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Repositories
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CDC-Maps
React component for visualizing your data on a map of the United States based off work done for the CDC
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TB_molecular_epidemiology
Algorithms for TB molecular epidemiology analysis
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SDP-MLaaS
Demonstrations of deploying machine learning models in R, MLflow, and ECPaaS
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MicrobeTrace
Forked from AABoyles/MicrobeTraceThe Visualization Multitool for Molecular Epidemiology and Bioinformatics
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ITF_Power_BI
Contains functions for pulling publicly-available global COVID-19 case and testing data for analysis and populating a Power BI dashboard.
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geneflow2
GeneFlow: A Workflow Engine for Bioinformatics and Public Health Analytics
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SARS-CoV-2_Sequencing
A collection of sequencing protocols and bioinformatic resources for SARS-CoV-2 sequencing.
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opencdc
This is the repository for the openCDC web site. Entire site is generated from data files describing CDC Open Technology types for data, api, code, and events. All CDC programs are welcome to submit pull requests with updates and new items useful to the public health open source community.
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react-starter-kit
Starter kit for use in creating new React projects
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Source-Code-Inventory
Forked from HHS/Source-Code-InventoryAn application and Wiki for managing an inventory of source code, compliant with the Federal Source Code Policy.
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BMGAP
The Bacterial Meningitis Genome Analysis Platform, an analysis pipeline, ExpressJS API, and ReactJS webapp for the analysis and characterization of bacterial meningitis samples
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template
Template repository with rules, practices, and privacy, license, records, notices to help programs use the CDCgov GitHub organization.
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covid19healthbot
This project collects automated screening protocols and self-checker algorithms from organizations implementing CDC screening protocols in interactive web sites, chat bots, and other technology.
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SDP Archived
Repository for CDC's Surveillance Data Platform project.
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LpSubP
LpSubP is a rapid subtyping tool for Legionella pneumophila with core gene set
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spheres-augur-build
This repository analyzes viral genomes using Nextstrain to understand how SARS-CoV-2, the virus that is responsible for the COVID-19 pandemic, evolves and spreads. This is a copy of the original Nextstrain ncov repository, which will (by default) build augur all 50 states + DC + PR using the same parameters and subsampling strategy.
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cancer-report-validator
The Cancer Report Validator (CRV) is an interactive tool for validating the content of electronic submissions of cancer-related medical information prior to a system's communication with a public health central cancer registry.
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AlignmentViewer
A lightweight visualization for genetic sequence alignments
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NeST
Forked from shashidhar22/NeST -
NeST-nf
NeST NextFlow
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TidyTree
Uncompromisingly Flexible Phylogenetic Trees in Javascript
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patristic
A Phylogenetics toolkit for Javascript
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fileto
A little library to work with Javascript File objects