Centers for Disease Control and Prevention

Repositories

• prime-data-input-client
  1 package JavaScript 2 2 11 3 Updated Nov 13, 2020

• prime-data-hub
  Kotlin Apache-2.0 1 1 34 (1 issue needs help) 2 Updated Nov 13, 2020

• CDC-Maps

  React component for visualizing your data on a map of the United States based off work done for the CDC
  JavaScript Apache-2.0 3 9 0 6 Updated Nov 14, 2020

• TB_molecular_epidemiology

  Algorithms for TB molecular epidemiology analysis
  R Apache-2.0 0 3 0 0 Updated Nov 13, 2020

• SDP-MLaaS

  Demonstrations of deploying machine learning models in R, MLflow, and ECPaaS
  R 1 1 2 1 Updated Nov 13, 2020

• MicrobeTrace

  Forked from AABoyles/MicrobeTrace

  The Visualization Multitool for Molecular Epidemiology and Bioinformatics

  bioinformatics genomics phylogenetic-trees phylogenetics epidemiology network-visualization hiv
  HTML Apache-2.0 20 29 69 0 Updated Nov 13, 2020

• ITF_Power_BI

  Contains functions for pulling publicly-available global COVID-19 case and testing data for analysis and populating a Power BI dashboard.

  global-health powerbi viz covid-19
  R Apache-2.0 2 3 0 0 Updated Nov 13, 2020

• geneflow2

  GeneFlow: A Workflow Engine for Bioinformatics and Public Health Analytics

  python workflow bioinformatics
  Python Apache-2.0 1 1 0 0 Updated Nov 13, 2020

• SARS-CoV-2_Sequencing

  A collection of sequencing protocols and bioinformatic resources for SARS-CoV-2 sequencing.
  Perl Apache-2.0 43 203 0 0 Updated Nov 9, 2020

• opencdc

  This is the repository for the openCDC web site. Entire site is generated from data files describing CDC Open Technology types for data, api, code, and events. All CDC programs are welcome to submit pull requests with updates and new items useful to the public health open source community.

  jekyll open-source collaboration open-data center-innovation
  HTML Apache-2.0 21 9 0 0 Updated Nov 6, 2020

• react-starter-kit

  Starter kit for use in creating new React projects
  JavaScript Apache-2.0 4 2 0 0 Updated Nov 4, 2020

• Source-Code-Inventory

  Forked from HHS/Source-Code-Inventory

  An application and Wiki for managing an inventory of source code, compliant with the Federal Source Code Policy.
  C# GPL-3.0 7 0 0 0 Updated Nov 3, 2020

• BMGAP

  The Bacterial Meningitis Genome Analysis Platform, an analysis pipeline, ExpressJS API, and ReactJS webapp for the analysis and characterization of bacterial meningitis samples
  Python Apache-2.0 1 0 0 8 Updated Oct 29, 2020

• template

  Template repository with rules, practices, and privacy, license, records, notices to help programs use the CDCgov GitHub organization.

  boilerplate privacy collaboration practices guidance governance records-management
  Apache-2.0 14 6 0 0 Updated Oct 29, 2020

• CDC_IIS_Open_Tools
  Apache-2.0 3 2 0 0 Updated Oct 29, 2020

• covid19healthbot

  This project collects automated screening protocols and self-checker algorithms from organizations implementing CDC screening protocols in interactive web sites, chat bots, and other technology.

  covid-19
  Apache-2.0 21 35 2 0 Updated Oct 22, 2020

• SDP Archived

  Repository for CDC's Surveillance Data Platform project.
  HTML Apache-2.0 3 3 0 0 Updated Oct 22, 2020

• LpSubP

  LpSubP is a rapid subtyping tool for Legionella pneumophila with core gene set

  python bioinformatics pipeline heatmap jupyter-notebook matplotlib subtyping
  Python 2 1 0 1 Updated Oct 20, 2020

• spheres-augur-build

  This repository analyzes viral genomes using Nextstrain to understand how SARS-CoV-2, the virus that is responsible for the COVID-19 pandemic, evolves and spreads. This is a copy of the original Nextstrain ncov repository, which will (by default) build augur all 50 states + DC + PR using the same parameters and subsampling strategy.
  Python Apache-2.0 2 1 0 0 Updated Oct 21, 2020

• prime-central
  JavaScript Apache-2.0 1 3 60 0 Updated Oct 20, 2020

• cancer-report-validator

  The Cancer Report Validator (CRV) is an interactive tool for validating the content of electronic submissions of cancer-related medical information prior to a system's communication with a public health central cancer registry.

  cancer data-validation informatics hl7 cda cancer-registry clinical-document-architecture
  Java Apache-2.0 3 1 2 4 Updated Oct 18, 2020

• AlignmentViewer

  A lightweight visualization for genetic sequence alignments
  JavaScript Apache-2.0 0 1 7 0 Updated Oct 15, 2020

• prime-data-input-api
  JavaScript 1 0 1 0 Updated Oct 15, 2020

• NeST

  Forked from shashidhar22/NeST
  Jupyter Notebook 9 0 1 1 Updated Oct 14, 2020

• NeST-nf

  NeST NextFlow
  Apache-2.0 2 0 0 0 Updated Oct 14, 2020

• IMslide_1
  R Apache-2.0 1 0 0 0 Updated Oct 2, 2020

• TidyTree

  Uncompromisingly Flexible Phylogenetic Trees in Javascript
  JavaScript Apache-2.0 0 4 10 0 Updated Sep 15, 2020

• patristic

  A Phylogenetics toolkit for Javascript
  HTML Apache-2.0 0 2 5 0 Updated Sep 15, 2020

• bioseq-js

  Forked from lh3/bioseq-js

  A fast, lightweight implementation of Smith-Waterman
  Apache-2.0 9 2 2 0 Updated Sep 15, 2020

• fileto

  A little library to work with Javascript File objects
  JavaScript Apache-2.0 0 0 0 0 Updated Sep 15, 2020