The Blue Brain Project

Repositories

• MorphIO

  A python and C++ library for reading and writing neuronal morphologies

  morphology neurons neuron
  C++ LGPL-3.0 8 15 23 (1 issue needs help) 8 Updated Nov 13, 2020

• nmodl

  Code Generation Framework For NEURON MODeling Language

  hpc dsl neuroscience compilers code-generation neuron-simulator nmodl
  C++ 6 22 99 (13 issues need help) 4 Updated Nov 13, 2020

• nexus

  Blue Brain Nexus - A knowledge graph for data-driven science

  scala nexus provenance knowledge-graph shacl
  Scala Apache-2.0 45 160 265 3 Updated Nov 13, 2020

• snap

  The Blue Brain Pythonic Simulation and Network Analysis Productivity layer

  analysis simulation modeling
  Python LGPL-3.0 3 7 5 3 Updated Nov 13, 2020

• NeuroR

  A collection of tools to repair morphologies
  AGS Script LGPL-3.0 2 3 1 1 Updated Nov 13, 2020

• CoreNeuron

  Simulator optimized for large scale neural network simulations.

  neural-network hpc neuroscience simulation-framework neuron supercomputing compartmental
  C++ BSD-3-Clause 25 70 62 (1 issue needs help) 8 Updated Nov 13, 2020

• spack

  Forked from spack/spack

  A flexible package manager that supports multiple versions, configurations, platforms, and compilers.
  Python 1,114 7 2 (1 issue needs help) 15 Updated Nov 13, 2020

• MOOC-hippocampus-network-simulation-2019
  Jupyter Notebook 1 5 0 2 Updated Nov 13, 2020

• Brion-wheels
  Shell 1 0 0 2 Updated Nov 13, 2020

• hpc-coding-conventions
  Python 1 6 8 1 Updated Nov 13, 2020

• nexus-web

  Nexus Web is the interface of Blue Brain Nexus

  react redux nodejs javascript typescript nexus storybook
  TypeScript 2 8 0 3 Updated Nov 13, 2020

• morph-tool
  AGS Script LGPL-3.0 3 0 2 1 Updated Nov 13, 2020

• mod2c

  Converter for mod files to C code
  C BSD-3-Clause 4 2 3 0 Updated Nov 12, 2020

• nexus-forge

  Building and Using Knowledge Graphs made easy

  data-science rdf knowledge-graph json-ld data-management shacl knowledge-engineering
  Python 7 10 10 2 Updated Nov 12, 2020

• Brayns

  Visualizer for large-scale and interactive ray-tracing of neurons

  python cloud async interactive websockets visualisation neuroscience
  C++ 42 221 18 2 Updated Nov 12, 2020

• libsonata

  A python and C++ interface to the SONATA format

  simulation sonata modelling circuit
  C++ LGPL-3.0 9 3 18 (2 issues need help) 3 Updated Nov 11, 2020

• .github

  GitHub Actions for BBP repos
  0 0 0 0 Updated Nov 11, 2020

• MVDTool

  Parser and command line tool for MVD file format
  C++ 6 1 1 3 Updated Nov 10, 2020

• NeuroM

  Neuronal Morphology Analysis Tool

  python morphologies neurons
  Jupyter Notebook BSD-3-Clause 39 65 41 13 Updated Nov 10, 2020

• neuromapp

  The neuromapp library reproduces the algorithms of the main software of the BBP as a collection of mini-apps
  C++ 14 4 2 1 Updated Nov 10, 2020

• TMD
  Python 18 6 4 3 Updated Nov 10, 2020

• NeuroMorphoVis

  A lightweight, interactive, extensible and cross-platform framework for building, visualizing and analyzing digital reconstructions of neuronal morphology skeletons extracted from microscopy stacks.

  morphologies neurons blender-addon neural-modeling mesh-reconstruction soma-reconstruction morphology-analysis
  Python 17 67 29 (3 issues need help) 0 Updated Nov 9, 2020

• BluePyEfe

  BluePyEfe: Blue Brain Python E-feature extraction
  Python 4 6 0 0 Updated Nov 9, 2020

• Brion

  Blue Brain C++ File IO Library

  synapse
  C++ 21 17 11 0 Updated Nov 6, 2020

• Long-range-micro-connectome

  BlueBrain's recipe writer to parameterize structure and logic of a mouse whole-neocortex connectome
  Python BSD-3-Clause 0 8 1 0 Updated Nov 5, 2020

• BluePyOpt

  Blue Brain Python Optimisation Library

  python cross-platform genetic-algorithm biological-simulations neuroscience computational-neuroscience evolutionary-algorithms
  Python 69 130 6 0 Updated Nov 5, 2020

• EMSim

  EMSim is a library that compute different electro-magnetic effects like LPF and VSD.
  C++ LGPL-3.0 0 0 0 0 Updated Nov 5, 2020

• BluePyMM

  Blue Brain Python Cell Model Management
  Python 7 7 31 1 Updated Nov 5, 2020

• matrix-trasposer

  Distributed Transposer Of Sparse Matrices With High-Cardinality Cell Structures
  C++ 0 0 0 0 Updated Nov 2, 2020

• HighFive

  HighFive - Header-only C++ HDF5 interface
  C++ BSL-1.0 81 303 39 (1 issue needs help) 3 Updated Oct 29, 2020