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Jirka Borovec Borda

Computer Vision & Machine Learning & Bio-Medical Imaging & Deep Learning

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pyImSegm

Image segmentation - general superpixel segmentation & center detection & region growing

Python 183 52
BIRL

BIRL: Benchmark on Image Registration methods with Landmark validations

Python 44 16
pyBPDL

Binary Pattern Dictionary Learning for gene activation in microscopy images

Python 6 1
PyTorchLightning/pytorch-lightning

The lightweight PyTorch wrapper for high-performance AI research. Scale your models, not the boilerplate.

Python 9.4k 1.1k
ij-CMP-BIA

Extension for ImageJ (Fiji) by BIA segmentation methods as plugins and some other useful API for image segmentation.

Java 1 9
docker_python-opencv-ffmpeg

Forked from Valian/docker-python-opencv-ffmpeg

Dockerfile containing FFmpeg, OpenCV4 and Python2/3, based on Ubuntu LTS

Dockerfile 23 15

2,594 contributions in the last year

Activity overview

Contributed to PyTorchLightning/pytorch-lightning, PyTorchLightning/pytorch-lightning-bolts, ultralytics/yolov5 and 5 other repositories

Contribution activity

October 2020

Created a pull request in PyTorchLightning/pytorch-lightning that received 11 comments

Add step index in checkpoint name [wip] [skip ci]

What does this PR do? Fixes #1764 Fixes #3789 Partially implements what is requested in #4335 TODO fix remaining tests update docs with option o…

+103 −64 • 11 comments

Docs/changelog for 1.0.3 Oct 20
prune ignore Oct 19
CI: add flake8 Oct 19
allow codecov upload to fail Oct 18
move base req. to root Oct 18
remove unused folder Oct 17
update PR template Oct 17
update stale bot Oct 17
fix hparams assign in init Oct 16
update chlog for past 1.0.2 Oct 15
fix jit for PT1.7 Oct 15
save initial arguments Oct 15
Bugfix/4156 filter hparams for yaml - fsspec Oct 14
docs: fix fomatting Oct 14
Tests: clean metrics Oct 14
new log section [skip ci] Oct 13
Skip reverted "temporary drop metrics tests while speeding them up" Oct 13
add symlink to requirements Oct 13
hotfix Drone install Horovod Oct 9
readme typo: swap example [skip ci] Oct 9
add parsing OS env vars Oct 9
ref: rename package Env Oct 9
fix overwrite & add test for model hooks Oct 8
ref: simplify test callback Oct 8
fix CI: try update horovod Oct 8
Some pull requests not shown.

Fix imports in datamodules Oct 23
update readme Oct 22
ci: prune PEP8 check Oct 20
fix imports Oct 19
consistent class docs Oct 15
fix SSL hooks fro pl 1.0 Oct 15
move datasets to existing package Oct 14
set min requirements PL 1.0 Oct 13
move requirements & bug fixing Oct 13
add symlink to requirements Oct 13

fix compatibility for hyper config Oct 15
comment missing arg Oct 13

update old references to filepath in ModelCheckpoint docs Oct 25
fix typos in docs: remove redundant whitespace in new-project.rst Oct 25
docs: Add favicon Oct 24
Update to NeMo Documentation Oct 24
BUG - Wandb: Sanitize callable. Oct 23
add bug_report_model to bug_report Oct 22
Add dirpath and filename parameter in ModelCheckpoint Oct 22
Update __init__.py Oct 22
Fix bug comparing max_steps to global step which inits at 0 Oct 22
Set correct device ids in DDP [wip] Oct 22
minor doc fix Oct 22
[Metrics] Unification of regression Oct 22
add svg logo [SKIP CI] Oct 21
New section for changelog [ci skip] Oct 21
[Metrics, fix] Fix unintended zero-only target in iou example Oct 21
Wrong num_calls for validation. Oct 21
Corrected f_beta computation Oct 21
add test if no loss is provided Oct 21
encourage draft PR submission [ci skip] Oct 21
update stale bot Oct 21
[FEAT] Logging in train callbacks Oct 20
Fix missing epoch end custom logging metrics Oct 20
add try except around onnxruntime if not properly installed Oct 20
activated color in all pytest runs Oct 20
Added the function for downloading the badges locally and replace the url with downlaod path Oct 20
Some pull request reviews not shown.

Fix typo in CONTRIBUTING.md Oct 23
docs: Add type hints to arguments in `pl_bolts.models` Oct 22
Raise ModuleNotFoundError when unavailable Oct 22
Adds Contibuting.md file Oct 22
bugfix: adjusted CityScapes DataModule to proper torchvision api Oct 22
data monitor callbacks Oct 22
Swav Oct 19
docs: Add empty lines before `Args:` in docstring Oct 19
Use `Optional` for arguments set to `None` by default Oct 17
Removed datamodule from an input parameter Oct 15
Remove unused exception reference Oct 15
Explicitly chain exceptions with `raise ... from ...` Oct 14
skip hanging tests & update imports Oct 13
Update README.md Oct 13
Fix typo in README.md Oct 13

Created an issue in PyTorchLightning/pytorch-lightning that received 6 comments

crashing dump for hparams containing fsspec

🐛 Bug If you pass a model as PL model argument and dum this model, it crashes... Please reproduce using [the BoringModel and post here] Failing sev…

6 comments

add CI check for valid import formatting Oct 19
clean-up metric testing Oct 10
Better/correct test for callback Oct 10
limit builds for Docs Oct 7
define PL dev debugger for all tests Oct 7
copy badges to release package Oct 6
use docker image for GH action testing Oct 3
Deprecate EvalModelTemplatein favor of BoringModel and another simple model that does actually learn Oct 3
correct the EvalModelTemplate methods - template Oct 3

add caching for used dataset Oct 15

missing tags in versions list Oct 14

Question: difference between Flax and Trax Oct 24

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