Xinglab

Repositories

• rmats-turbo
  C++ 12 32 11 3 Updated Oct 28, 2020

• abPOA

  abPOA: an SIMD-based C library for fast partial order alignment using adaptive band

  simd long-reads multiple-sequence-alignment partial-order-alignment banded-dp consensus-sequence
  C MIT 0 7 0 0 Updated Oct 21, 2020

• TideHunter

  TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain

  tandem-repeats long-reads multiple-sequence-alignment nanopore-sequencing seed-and-chain partial-order-alignment
  C MIT 1 12 3 0 Updated Oct 21, 2020

• siri
  Python 0 0 0 0 Updated Oct 18, 2020

• isoCirc

  isoCirc
  Python GPL-3.0 0 0 0 0 Updated Sep 12, 2020

• CLAM

  CLIP-seq Analysis of Multi-mapped reads

  expectation-maximization peak-caller iclip peak clip-seq rip-seq eclip
  Python GPL-3.0 4 13 5 0 Updated Jul 29, 2020

• rmats2sashimiplot
  Python GPL-2.0 32 49 5 2 Updated Jul 28, 2020

• PEGASAS

  Pathway Enrichment-Guided Activity Study of Alternative Splicing (PEGASAS)

  rna-seq cancer alternative-splicing signaling-pathways tumor-progression
  Python 5 7 0 0 Updated Jun 19, 2020

• PAIRADISE

  Paired Replicate Analysis of Allelic Differential Splicing Events
  Python 0 6 0 0 Updated Jun 9, 2020

• Myc-regulated_AS_PrCa_paper

  Scripts for plotting figures and running analysis throughout the manuscript
  R 2 2 0 0 Updated Jun 5, 2020

• GTEx-brain-sQTL
  R 1 4 0 0 Updated Jun 2, 2020

• IRIS

  IRIS: Isoform peptides from RNA splicing for Immunotherapy target Screening

  rna-seq immunotherapy neoantigen rna-splicing tumor-antigen
  Python 0 6 0 0 Updated Dec 30, 2019

• DARTS

  Deep-learning Augmented RNA-seq analysis of Transcript Splicing
  Python 26 84 11 0 Updated Nov 19, 2019

• GLiMMPS

  GLiMMPS
  R 1 6 0 1 Updated Oct 8, 2019

• SQUID

  Stringent Quantitation of Unspliced Intron by Deep-sequencing

  rna-seq intron-retention intron-pi
  Python GPL-3.0 1 2 0 0 Updated Sep 16, 2019

• ASPRIN
  Python GPL-3.0 0 2 0 0 Updated Jul 24, 2019

• lr2rmats

  Long read to rMATS
  C GPL-3.0 4 18 2 0 Updated Jan 30, 2019

• rMATS-DVR
  Python GPL-3.0 11 18 3 0 Updated Jan 17, 2019

• SURVIV

  Survival Analysis of mRNA Isoform Variation
  Python 9 5 1 0 Updated Oct 31, 2018

• Xinglab.github.io
  HTML 0 1 0 0 Updated Sep 27, 2018

• SEASTAR

  SEASTAR - Systematic Evaluation of Alternative transcription STArt site in RNA
  Python GPL-3.0 6 8 2 0 Updated Jan 21, 2018

• proteoseq

  Proteotranscriptome pipeline
  Objective-J GPL-3.0 1 2 1 0 Updated Apr 16, 2017

• rMATS-STAT
  Python 9 12 4 0 Updated Aug 31, 2016

• rPGA
  Python GPL-2.0 6 13 1 0 Updated Jun 24, 2016