mimic-iii
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Feb 26, 2020 - Jupyter Notebook
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Jun 9, 2020 - Python
The guidance indicates the following recommended database and schema set up:
"export OMOP_SCHEMA='omop'
export OMOP='host=localhost dbname=postgres user=postgres options=--search_path='$OMOP_SCHEMA
export MIMIC='host=localhost dbname=postgres user=postgres options=--search_path=mimiciii'"
Unfortunately, the MIMIC-III postgres guidance indicates to use "mimic" as the dbname. I found out rath
Binder (http://mybinder.org/) can be used to make notebooks web executable. Setting this up on the repository would allow people to participate in workshops without any installation requirements.
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Dec 17, 2017 - Jupyter Notebook
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Jan 24, 2019 - Python
The dowload function should be redesigned so it can be called from the command line.
The argparse library can be used to allow the user to enter their username and password directly at the command line.
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Jun 13, 2020 - Python
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Mar 27, 2017 - Jupyter Notebook
the demo notebook should more clearly outline:
- how to install MIMIC
- how to use the MIMIC Code Repo to generate views (
icustay_detail,oasis, etc).
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Jun 30, 2020 - TeX
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Feb 7, 2018
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In the references section of some of these clinical notes, there is text containing "JavaScript:parent.POPUP...". It always happens at the end of the file, and these are primarily physician notes. 163/873 are from a single caregiver (cgid = 18414).