#
gwas
Here are 194 public repositories matching this topic...
A comprehensive tutorial about GWAS and PRS
unix
bioinformatics
gwas
r
genomics
genetics
plink
prs
population-structure
qc
population-stratification
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Updated
Jan 3, 2020
machine learning for genomic variants
emr
aws
bioinformatics
gwas
genome
random-forest
notebook
vcf
databricks
association-studies
variant-spark
variantspark
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Updated
Nov 6, 2020 - JavaScript
A Javascript/d3 embeddable plugin for interactively visualizing statistical genetic data from customizable sources.
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Dec 11, 2020 - JavaScript
Rare variant test software for next generation sequencing data
c-plus-plus
gwas
kernel
genetics
ngs
next-generation-sequencing
variants
meta-analysis
genotype
umich
skat
association-analysis
rare-variant
vcf-files
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Nov 18, 2020 - C++
Pan-genome wide association studies
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Oct 4, 2017 - Python
Python command line tool for Multi-Trait Analysis of GWAS (MTAG)
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Aug 20, 2020 - Python
SEER, reimplemented in python 🐍 🔮
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Nov 19, 2020 - Python
Mixed models @lme4 + custom covariances + parameter constraints
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Updated
Sep 8, 2020 - R
LocusCompareR is a R package with visualization tools for comparing two genetic association datasets.
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Updated
May 6, 2020 - R
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Dec 18, 2019 - C++
Efficient variant-call data storage and retrieval library using the TileDB storage library.
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Dec 11, 2020 - C++
Visual Machine Learning of Genome-Phenome Associations
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Sep 18, 2020 - C++
GORpipe is a tool based on a genomic ordered relational architecture and allows analysis of large sets of genomic and phenotypic tabular data using declarative query language, in a parallel execution engine.
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Dec 9, 2020 - Java
Cell type specific enrichments using finemapped variants and quantitative epigenetic data
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Jan 15, 2020 - R
R package to perform Bayesian Genome-Wide Association Studies
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Oct 8, 2020 - R
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Dec 10, 2018 - Python
Adjacency-constrained hierarchical clustering of a similarity matrix
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Oct 28, 2020 - R
PolyFun (POLYgenic FUNctionally-informed fine-mapping)
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Sep 6, 2020 - Python
the hierfstat package
gwas
r
devtools
simulations
population-genomics
population-genetics
kinship
quantitative-genetics
hierfstat
fstatistics
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Aug 9, 2020 - R
A faster lmm for GWAS. Supports GPU backend.
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Dec 5, 2018 - D
Heritability, genetic correlation and functional enrichment estimation for case-control studies
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Sep 6, 2020 - Python
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The
assert_array_shapecall is used a lot in REGENIE, and serves both as a runtime check and as documentation for the reader. We should sprinkle it liberally through other functions.