#
singularity
Here are 324 public repositories matching this topic...
A DSL for data-driven computational pipelines
docker
groovy
aws
cloud
bioinformatics
pipeline
nextflow
hpc
reproducible-research
workflow-engine
slurm
pipeline-framework
sge
singularity
reproducible-science
dataflow
singularity-containers
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Updated
Nov 4, 2020 - Groovy
Simplify HPC and Batch workloads on Azure
docker
serverless
hpc
azure
containers
gpu
mpi
slurm
nfs
singularity
azure-batch
azure-functions
glusterfs
rdma
infiniband
batch-processing
windows-containers
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Updated
Aug 4, 2020 - Python
ivotron
commented
Jul 22, 2020
similar to #785 but for docker pull
A docker image for converting docker images to singularity images.
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Updated
Oct 13, 2020 - Shell
Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing
docker
workflow
bioinformatics
pipeline
genomics
nextflow
cancer
somatic-variants
reproducible-research
containers
next-generation-sequencing
singularity
badge
reproducible-science
travis-link
somatic
germline
scilifelab
gitter-badge
germline-variants
gitter-link
scilifelab-link
nextflow-link
nbis-link
ngi-link
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Updated
Jan 27, 2020 - Nextflow
b-butler
commented
Sep 24, 2020
Description
hoomd.box.Box.from_box method mentions dimension attributes and keys as valid indicators of dimension for conversion to a Box object. This is not true and needs to be changed.
sashayakovtseva
opened
Mar 15, 2019
Analysis pipeline to detect germline or somatic variants from WGS / targeted sequencing
docker
workflow
bioinformatics
pipeline
genomics
nextflow
cancer
reproducible-research
containers
conda
next-generation-sequencing
singularity
reproducible-science
variant-calling
somatic
germline
nf-core
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Updated
Oct 30, 2020 - Nextflow
Singularity implementation of k8s operator for interacting with SLURM.
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Updated
Oct 18, 2019 - Go
Snakemake pipelines for nanopore sequencing data archiving and processing
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Updated
Sep 16, 2020 - Python
server for storage and management of singularity images
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Updated
Oct 29, 2020 - JavaScript
A extremely fast ioc container for high performance applications
ioc
csharp
dotnet
dependency-injection
singularity
netcore
di-container
inversion-of-control
ioc-container
net
netstandard
duality
di
dependency-injection-container
ioc-framework
inversionofcontrol
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Updated
Sep 14, 2020 - C#
Nextflow pipeline for analysis of direct RNA Nanopore reads
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Updated
Oct 16, 2020 - HTML
Tutorial for using Singularity containers
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Updated
Oct 1, 2020
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Updated
Oct 22, 2020 - Dockerfile
Create container images for using Julia packages (especially useful in environments without Internet access)
docker
offline
containers
julia-language
singularity
julia-packages
julia-package-compiler
static-compilation
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Updated
Oct 11, 2020 - Julia
Hex-mesh simplification and optimization
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Updated
Jun 10, 2018 - C++
orchestration for singularity containers (under development)
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Updated
Jun 1, 2020 - Python
A Simple Way of Creating Job Workflows in Go running in Processes, Containers, Tasks, Pods, or Jobs
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Updated
Oct 5, 2020 - Go
Sherlock Port Forwarding Utility
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Updated
Oct 20, 2020 - Shell
scientific filesystem: a filesystem organization for scientific software and metadata
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Updated
Feb 24, 2020 - Python
streamlined singularity python client (spython) for singularity
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Updated
Sep 17, 2020 - Python
Nextflow basic tutorial for newbie users
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Updated
Jun 17, 2018 - Nextflow
software to generate a reproducible container with a battery of experiments
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Updated
Sep 4, 2020 - Python
Singularity 101
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Updated
Oct 17, 2019
COMP Superscalar (COMPSs) is a framework which aims to ease the development and execution of applications for distributed infrastructures, such as Clusters, Grids and Clouds.
python
c
java
docker
hpc
distributed-computing
slurm
pipeline-framework
singularity
workflows
workflow-management-system
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Updated
Nov 2, 2020 - Java
Generic germline variant annotation pipeline
docker
workflow
gene
database
singularity
vcf
variants
snv
vep
disease-gene-association
indels
annotation-tool
vcfanno
germline
variant-annotations
annotation-framework
snvs
germline-variants
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Updated
Sep 29, 2020 - Python
convert a singularity image back to Docker, full circle! #containerfriends
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Updated
May 29, 2020 - Shell
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Version of Singularity:
3.0.3
Expected behavior
Some progress or update information during the creation of the SIF file.
Actual behavior
During "Creating SIF file..." step, the console does not produce any visible output for the user - but does create the resulting file eventually.
Steps to reproduce behavior
I was executing a few “larger” builds through the bui