#
biochemistry
Here are 70 public repositories matching this topic...
Ribbon diagrams of proteins in #golang.
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Feb 20, 2021 - Go
COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.
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Jul 30, 2021 - Component Pascal
Computational synthetic biology: Predicting DNA edits for bioengineering
data-mining
deep-learning
synthetic-biology
biochemistry
fermentation
metabolic-network
bioengineering
computational-synthetic-biology
acetaminophen
reaction-operators
metabolic-engineering
enzyme-function
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Mar 27, 2017 - Java
Python package to study microbial communities using metabolic modeling.
python
flux
community
modeling
systems-biology
biochemistry
microbiome
cobra
microbiota
cobrapy
metabolic-models
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Jul 26, 2021 - Python
Experimental tech-demo for PhD thesis in Scientific Markdown; official:
markdown
latex
makefile
biology
pandoc
latexmk
latex-document
biochemistry
make
zotero
phd-thesis
electron-microscopy
microscopy
citer
eds
diatom
biofilm
markdown-template
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Dec 29, 2019 - Shell
Contact map analysis for biomolecules; based on MDTraj
bioinformatics
molecular-dynamics
computational-biology
biochemistry
protein-protein-interaction
protein-ligand-interactions
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Jul 29, 2021 - Python
Analysis of non-covalent interactions in MD trajectories
python
bioinformatics
chemistry
analysis
simulation
toolkit
dynamics
molecular-structures
molecular-dynamics
computational-biology
qt5
biochemistry
interactions
biophysics
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Sep 1, 2020 - Python
An implementation of genome-scale model reconstruction using Cost Optimization Reaction Dependency Assessment by Schultz et. al
flux
bioinformatics
genome
modeling
systems-biology
biochemistry
metabolism
reconstruction
cobra
cobrapy
metabolic-models
metabolic-network
metabolic-reconstruction
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Oct 24, 2018 - Python
A VR app which allows creation and manipulation of dynamic models of polypeptides. Focus is fun and learning.
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Jan 1, 2020 - C#
Wetlab Calculator
laboratory
genetics
biology
dna
biochemistry
biology-lab-protocols
pcr
wetlab-protocol
restriction-enzyme
polymerase-chain-reaction
biotechnology
goldengate
wetlab-calculator
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Mar 21, 2019
Virtual screening on PriA-SSB and RMI-FANCM with the LifeChem library
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May 30, 2019 - Jupyter Notebook
genomics, biochemistry, biotechnology, cell biology, biophysics, ecology
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Jan 31, 2020 - Python
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Jan 8, 2021 - Jupyter Notebook
semi-supervised deep learning for classification of molecular structures
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May 15, 2017 - Python
Visualize alpha-helical peptide sequences in Python using helical wheels and wenxiang diagrams
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May 7, 2020 - Python
Tui Lab – Bioinformatics resources, scripts and ideas.
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Jul 31, 2017 - HTML
WebVR implementation of molecular structure viewer NGL
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Jul 4, 2020 - JavaScript
Bioinformatics (biochemistry) data processing scripts for NMR, and protein data analysis (PyMOL)
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Jan 31, 2018 - Python
BioMight - Human Biological Animation Engine
education
biology
pharmacology
virtual-reality
dna
biochemistry
javaee
anatomy
x3d
molecular-biology
x3dom
virology
endocrinology
cell-biology
enterprise-architecture
bacteriology
javawebapp
immune-system
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Feb 26, 2020 - Java
Analyze FRET Binding Data with R
r
plot
biochemistry
data-analysis
fluorescence
spectroscopy
fret
stoichiometry
biophysics
binding-assay
binding-constant
fluorescence-polarization
fluorescence-anisotropy
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Feb 10, 2020 - R
Use the parallelization framework jug to build exposons!
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Apr 16, 2020 - Python
Web-based front- and backend for PDB2Movie scripts
biology
dynamics
protein-data-bank
protein-structure
biochemistry
protein-sequences
physics-simulation
flexibility
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Oct 10, 2018 - PHP
Matlab implementation of automated model reduction of biochemical reaction networks
systems-biology
biochemistry
graph-theory
applied-mathematics
ordinary-differential-equations
mathematical-modelling
model-reduction
chemical-reaction-networks
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Jan 4, 2021 - MATLAB
A statistical model to predict heterologous membrane protein expression in E. coli!
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Feb 12, 2020 - R
Utility to simplify obtaining information from genome-scale models as well as their manipulation. This implementation is available only for working with COBRApy.
python
bioinformatics
modeling
systems-biology
computational-biology
biochemistry
modeling-tool
cobra
cobrapy
metabolic-models
metabolic-network
metabolic-reconstruction
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Mar 13, 2020 - Jupyter Notebook
summarise antiSMASH 5.0 KnownClusterBlast output
json
bioinformatics
docker-image
jq
biochemistry
command-line-tool
bash-script
bioinformatics-analysis
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Nov 16, 2019 - Shell
A MATLAB-based program for processing and analysis of nanoSIMS data
fish
chemistry
analysis
biology
matlab
image-processing
biochemistry
image-analysis
electron-microscopy
isotope
roi
geology
elements
image-registration
roi-segmentation
material-science
nanosims
chemical-imaging
qsa
dead-time
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Jan 13, 2018 - MATLAB
Toolbox for post-correlation cryo-CLEM workflow developed at Chlanda Lab, Heidelberg University.
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Jun 30, 2021 - Java
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