likelihood-free
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Jul 10, 2020 - R
I am using the windows version and while running the Hodgkin Huxley example from the tutorial with spyder(same exact code of the tutorial) I receive this error:
Traceback (most recent call last):
File "E:\courses\mini-project\HH.py", line 441, in
density=density)
File "c:\users\mosi\delfi\delfi\inference\APT.py", line 65, in __
Make a list of papers citing / using pyabc, as done for amici (https://github.com/ICB-DCM/AMICI/blob/master/documentation/references.md), and append to documentation somewhere.
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Jul 7, 2020 - Python
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Jun 16, 2020 - MATLAB
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Jun 22, 2018 - Python
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Jun 15, 2020 - Julia
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For example,
in ELFI tutorial...
We should specify observed data like below:
Y = elfi.Simulator(MA2, t1, t2, observed=y_obs)for calculating a discrepancy like:
d = elfi.Distance('euclidean', S1, S2)What I wonder is,
without explicitly passing 'observed' argument to the Simulator object,
can we make it possible to do ABC-rejection by modifying discrepancy function?
e.g. inste