Here are
35 public repositories
matching this topic...
Hexrays Toolbox - Find code patterns within the Hexrays AST
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Updated
Jul 29, 2020
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Python
variant expressions, annotation, and filtering for great good.
GitHub Satellite 2020 workshops on finding security vulnerabilities with CodeQL for Java/JavaScript.
The Platinum Genomes Truthset
A modular annotation tool for genomic variants
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Updated
Sep 17, 2020
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JavaScript
simuG: a general-purpose genome simulator
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Updated
Jun 22, 2020
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Perl
A phenotype-based tool for variant prioritization in WES and WGS data
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Updated
Jun 14, 2020
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Java
High-level API for storing and querying sequence variant data
VVP (VAAST Variant Prioritizer) rapidly prioritizes genetic variants
What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.
R tools to interact with hap.py output
Reporting toolbox for happy output
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Updated
Sep 13, 2016
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Shell
Mapping complex genotypes to phenotypic subclusters
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Updated
Jan 31, 2018
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Python
Variant annotation and filtration server ALAPY Genome Explorer
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Updated
May 22, 2017
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Shell
From SNP and structural variant calling to GWAS.
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Updated
Aug 25, 2017
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HTML
LOVD+ -- LOVD for diagnostics: analysis of whole-exome data using LOVD.
language-agnostic testing for inheritance models
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Updated
Apr 25, 2018
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Python
A Prototype for Defining the Ancestral Alleles for Ones that Modify Human Phenotypes
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Updated
Jan 16, 2018
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Python
Create a set of reference-guided multiple-aligned predicted or founder sequences from a variant call file and a reference sequence.
KS-Evol : Non-parametric hypothesis testing for time-series genomic variants using Monte Carlo based Komogrov-Smirnov test
Mapping Clinically Relevant Mutations to Protein Structures
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Updated
Sep 10, 2020
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Python
A collection of web tools for biologists
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Updated
Jul 30, 2017
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Python
A flexible variant annotator written in Python
a core part of the MiModD package for use as a library
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Feb 6, 2018
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Python
Library that assists the analysis of VCF files
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Updated
Apr 3, 2020
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Jupyter Notebook
Skeleton for NGS pipeline, now backbone of OVAS project
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Updated
Jun 12, 2017
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Python
Calculate SMD and Hamming and Jaccard distances between each pair of samples in a set of variant files.
A comprehensive platform for population-scale genomic analyses
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Updated
Sep 14, 2020
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Java
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