Göke Lab

Repositories

• modules

  Forked from nf-core/modules

  Repository to host tool-specific module files for the Nextflow DSL2 community!
  Nextflow MIT 74 0 0 0 Updated Apr 28, 2021

• bambu

  Reference-guided transcript discovery and quantification for long read RNA-Seq data

  r bioconductor transcriptomics rna-seq-analysis transcript-quantification bambu long-reads
  R GPL-3.0 4 19 1 0 Updated Apr 27, 2021

• m6anet
  Python 2 11 1 0 Updated Apr 23, 2021

• proactivWorkflow

  proActiv workflow: Identifying active and alternative promoters from RNA-Seq data
  0 0 0 0 Updated Apr 22, 2021

• proActiv

  Estimation of Promoter Activity from RNA-Seq data

  r genomics promoter-activity rna-seq-data promoter-annotation alternative-promoters
  R 6 23 5 0 Updated Apr 21, 2021

• nanoseq

  Forked from nf-core/nanoseq

  Nanopore demultiplexing, QC and alignment pipeline
  Nextflow MIT 18 1 0 1 Updated Apr 6, 2021

• xpore

  Detection of differential RNA modifications from direct RNA sequencing

  machine-learning rna-seq genomics rna transcriptomics modification nanopore-sequencing
  Python MIT 7 43 24 (1 issue needs help) 2 Updated Apr 3, 2021

• bioinformatics-workflows

  minimal example implementations for bioinformatics workflow managers

  bioinformatics workflow-management bioinformatics-workflows
  Nextflow MIT 0 1 0 0 Updated Mar 23, 2021

• ICGC_alternative_promoters

  A pipeline for alternative promoter analysis.
  Nextflow MIT 0 0 0 0 Updated Mar 2, 2021

• sg-nex-data

  Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project

  rna-seq nanopore transcriptomics long-reads direct-rna-sequencing
  5 18 2 0 Updated Oct 30, 2020

• NanoporeRNASeq

  Nanopore RNASeq data

  rna-seq r nanopore bioconductor long-reads sg-nex
  R MIT 0 1 0 0 Updated Oct 14, 2020

• nanorna-bam

  Forked from cying111/nanorna-bam

  Downstream analysis of Nanopore RNA data - transcriptome reconstruction and feature counts (under development)
  Nextflow MIT 3 0 0 0 Updated Jul 2, 2020