A modular laboratory experiment management suite.
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Oct 26, 2020 - Python
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fluorescence
Here are 66 public repositories matching this topic...
A Python toolbox for quantitative, reproducible flow cytometry analysis
python
c-plus-plus
workflow
jupyter
analysis
data-driven
scientific-computing
notebooks
fluorescence
flow-cytometry-analysis
mixture-modeling
gate
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Oct 2, 2020 - Python
Precision current source, with optional optical feedback, for driving LEDs and laser diodes
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Sep 17, 2020 - C++
Everything within the Land model (Soil Plant Atmosphere Module, Land Hydrology, etc)
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Oct 23, 2020 - Julia
An interactive image processing program for biologists written in Python.
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Apr 25, 2020 - Python
Burst analysis software for smFRET. **Moved to OpenSMFS organization**
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Mar 6, 2019 - Python
Modeling and Bayesian analysis of fluorescence and absorbance assays.
python
drug-discovery
fluorescence
bayesian-analysis
assay-modeling
experimental-data-analysis
autoprotocol
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Apr 12, 2019 - Python
Utilities for pre-processing emission-excitation-matrix (EEM).
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Mar 19, 2020 - R
File format agnostic low level, high performance API to read and process time-tagged-time resolved (TTTR) data for single-molecule and image spectroscopy
python
single-molecule
fluorescence
fluorescence-microscopy-imaging
ptu
flim
becker
fluorescence-correlation
picoquant
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Sep 14, 2020 - C++
Library for coarse-grained simulations of probes flexibly coupled to biomolecules.
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Oct 11, 2020 - C++
Iterative H-minima Based Marker-Controlled Watershed for Cell Nucleus Segmentation
medical-imaging
fluorescence
nucleus
medical-image-processing
nucleus-segmentation
cell-segmentation
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Mar 15, 2017 - MATLAB
Global analysis platform for fluorescence data
correlation
protein
fluorescence
spectroscopy
multiple-datasets
fluorescence-data
global-analysis
fluorescence-decays-analysis
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Sep 14, 2020 - Python
MATLAB package to analyze single-molecule FRET data
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Oct 21, 2020 - MATLAB
A framework for tracking and analyzing flowing blood cells in time lapse microscopy images
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Sep 28, 2020 - R
Single-cell transcriptome analysis by fluorescence labeling
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May 1, 2017 - HTML
Spectra prediction software and GUI for anyone to use.
python
machine-learning
deep-neural-networks
deep-learning
neural-network
molecule
ml
fluorescence
spectra
emission
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Oct 14, 2019 - Jupyter Notebook
This software is used to analyze protein thermal and chemical stability data monitored by CD or fluorescence spectroscopy.
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May 14, 2018 - C++
An R package for the processing of plate reader and flow cytometry data. This includes: normalisation and calibration of plate reader data, and removing debris and doublets and calibration of flow cytometry data.
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Aug 20, 2020 - R
Zebrafish embryo fluorescence quantification
biology
image-processing
biological-data-analysis
image-analysis
fluorescence
fluorescence-microscopy-imaging
zebrafish
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Feb 21, 2020 - Python
My master thesis on fluorescence in bidirectional rendering
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Jun 19, 2018
Using Arduino and TSL250R-LF sensor to identify/compare fluorescence levels emitted from a green light triggered protein sample.
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Nov 24, 2015 - Arduino
R and RR course material for the YRLS 2017 meeting
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Jun 6, 2019 - HTML
Analyze FRET Binding Data with R
r
plot
biochemistry
data-analysis
fluorescence
spectroscopy
fret
stoichiometry
biophysics
binding-assay
binding-constant
fluorescence-polarization
fluorescence-anisotropy
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Feb 10, 2020 - R
DLTReconvolution - A Python based Software for the Analysis of Lifetime Spectra using the iterative least-square Reconvolution Method
python
analysis
least-squares
decomposition
convolution
fluorescence
inverse-problems
deconvolution
fourier-transform
least-square-regression
exponential-distributions
fls
lifetime-spectroscopy
pals
decay-spectrum
lifetime-spectra
positron-lifetime-spectra
reconvolution
multi-exponential
ill-posed
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Mar 19, 2020 - Python
vngFCM is a package designed to analyse fluocytometry data of small bacterial cells.
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Oct 12, 2019 - R
A web tool for the analysis of Fluorescence Recovery After Photobleaching (FRAP) data.
web-application
bioinformatics-pipeline
vb-net
fluorescence
bioinfomatics
bioinformatics-analysis
fluorescence-microscopy-imaging
frap
frap-analysis
frap-experiment
fluorescence-recovery
easyfrap-web
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May 8, 2019 - JavaScript
GLabViz - Interactive Analysis and Visualization Application for Scientific Data written in Python using Qt and pyqtrgaph
python
qt
data-visualization
spectrum-analyzer
data-analysis
qt-gui
image-analysis
fluorescence
spectroscopy
spectral-analysis
pyqtgraph
fluorescence-microscopy-imaging
databrowser
uv-vis
fluorescence-decays-analysis
fluorescence-microscopy-analysis
spectra-analysis
python-gui-apps
lifetime-analysis
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Jul 2, 2020 - Python
iFISH Probe Design: a Python3 package to build iFISH probes.
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Sep 11, 2019 - Python
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I recently had to do a fresh install of anaconda, and now importing fretbursts returns an import error for normpdf. I've checked and it's been removed in 3.1, I reverted back to matplotlib 3.0.3 and the error went away.
It's not a huge issue for now but I just thought I should let you know.