wgs

fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing

Rapid determination of appropriate reference genomes.

Analysis pipelines for sequencing data

Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.

Snakemake-based workflow for detecting structural variants in WGS data

Data management of large-scale whole-genome sequence variant calls (Development Version)

Kourami: Graph-guided assembly for HLA alleles

A tool to genotype CYP2D6 with WGS data

Integrated copy number variation detection toolset

Seave is a web platform that enables genetic variants to be easily filtered and annotated with in silico pathogenicity prediction scores and annotations from popular disease databases. Seave stores genomic variation of all types and sizes, and allows filtering for specific inheritance patterns, quality values, allele frequencies and gene lists. Seave is open source and deployable locally, or on a cloud computing provider, and works readily with gene panel, exome and whole genome data, scaling from single labs to multi-institution scale.

PySeqArray: data manipulation of whole-genome sequencing variants with SeqArray files in Python (pre-release version)

Exome/Capture/RNASeq Pipeline Implementation using snakemake

vSNP -- validate SNPs

qq围棋wgs棋谱转sgf格式

经纬度转换，sqlldr入库，Geometry工具

Multigranular Analysis of Regulatory Variants on the Epigenomic Landscape

In this training course you will find theory and practice material for introducing yourself to wgs analysis for bacterial, including outbreak investigation.

Generate Lorenz plots and Coverage plots directly from BAM files

Call and score variants from WGS/WES of rare disease patients.

Trim, Align to genome, Deduplicate, Realign WGS sequencing samples

Bacterial analysis Toolbox for profiling the Resistome of ESKAPE pathogens using WGS

De novo SNV analysis pipeline

Various scripts for efficient processing of 10k Salmonella genomes

Snakemake-based workflow for generating artificial genomes with structural variants

A flexible, automation and pragmatic workflow tool to process the NGS data.

A simulator to genarate WSG data from refrence

A pipeline for detecting Somatic Insertion of DE novo RETROcopies

A Snakemake pipeline for Quality Control of Whole Genome Sequencing data