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genome
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DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
science
machine-learning
bioinformatics
deep-learning
genomics
genome
tensorflow
ngs
sequencing
dna
deep-neural-network
deepvariant
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Jan 22, 2021 - Python
Using artificial intelligence and genetic algorithms to automatically write programs. Tutorial: http://www.primaryobjects.com/cms/article149
c-sharp
programming-language
ai
genome
genetic-algorithm
program-synthesis
artificial-intelligence
genetic-programming
genetic-algorithms
fitness-score
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Oct 7, 2020 - C#
fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing
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Nov 20, 2020 - Nim
Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
bioinformatics
snps
medicine
genomics
genome
cancer
biology
vcf
ensembl
medical
cancer-genomics
genome-annotation
proteomics
gtf
bed
cancer-genomes
genome-sequencing
genome-browser
genomes
csv-parser
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Sep 21, 2020 - Python
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Jan 25, 2021 - C++
karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome
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Dec 22, 2020 - R
GenomeTools genome analysis system.
ruby
python
c
library
bioinformatics
lua
annotation
genomics
genome
gff3
repeats
genometools
toolkit
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Dec 9, 2020 - C
A genome browser that shows long reads and complex variants better
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Oct 25, 2020 - JavaScript
Next generation sequencing reads de novo assembler.
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Jan 21, 2021 - C
Viral genomics analysis pipelines
genomics
genome
variant-calling
bam
genome-sequencing
illumina
fastq
genome-assembly
variant-annotations
viral-ngs
viral
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Nov 3, 2020 - Python
Genomic Data Retrieval with R
r
genomics
genome
metagenomics
rstats
genome-annotation
r-package
meta-analysis
genome-retrieval
biomart
database-retrieval
ncbi-genbank
ensembl-servers
sequenced-genomes
proteome
peer-reviewed
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Dec 20, 2020 - R
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Jan 26, 2021 - M4
Genome annotation with AUGUSTUS
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Jan 28, 2021 - C++
Nanopore sequence read simulator
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Nov 24, 2020 - Python
machine learning for genomic variants
emr
aws
bioinformatics
gwas
genome
random-forest
notebook
vcf
databricks
association-studies
variant-spark
variantspark
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Jan 21, 2021 - JavaScript
Raw dump of Kenneth Reitz's DNA Sequence, Ancestry, Genealogy, &c.
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Oct 2, 2019 - HTML
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Jan 21, 2021 - C++
Dotplot large Genomes in an Interactive, Efficient and Simple way
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Sep 13, 2020 - Python
A package for designing compact and comprehensive capture probe sets.
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Jan 26, 2021 - Python
DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome
nlp
machine-learning
natural-language-processing
deep-learning
genome
gpu
sequence
kmer
dnabert-model
kmer-format
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Jan 10, 2021 - Python
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Hi there,
I wonder if it would be possible to add a feature in the pipeline allowing libraries made with different adapter sequences to be processed in the same run.
For example, my colleagues and I are often working with a mixture of Illumina and BGI (4 channel) sequencing data and it would be cool to be able run these data together, instead of having to run adapter removal separately for eac