nextflow-io

Repositories

• nextflow

  A DSL for data-driven computational pipelines

  docker groovy aws cloud bioinformatics pipeline nextflow
  Groovy Apache-2.0 263 1,172 106 (5 issues need help) 13 Updated Aug 13, 2020

• website

  Nextflow public web site
  HTML 9 5 1 1 Updated Aug 10, 2020

• rnaseq-nf

  A proof of concept of RNAseq pipeline

  genomics nextflow rnaseq
  Nextflow MPL-2.0 35 20 2 1 Updated Aug 8, 2020

• nf-ignite
  Groovy 0 0 0 0 Updated Aug 1, 2020

• tests

  Nextflow tests
  Nextflow Apache-2.0 2 3 0 0 Updated Jul 30, 2020

• awesome-nextflow

  A curated list of nextflow based pipelines

  nextflow awesome-list
  CC0-1.0 44 256 1 0 Updated Jul 23, 2020

• hello

  Classic hello world script in Nextflow language

  nextflow hello-world
  Nextflow GPL-3.0 17 0 0 0 Updated Jun 18, 2020

• nextflow-s3fs

  Forked from Upplication/Amazon-S3-FileSystem-NIO2

  An S3 File System Provider for Java 7
  Java Apache-2.0 96 0 5 1 Updated Jun 14, 2020

• nf-legacy-cloud

  Legacy cloud support for Nextflow pipeline system
  Groovy Apache-2.0 0 0 0 0 Updated May 31, 2020

• patterns

  A curated collections of Nextflow implementation patterns -- http://nextflow-io.github.io/patterns/index.html

  nextflow
  Nextflow MIT 37 156 4 2 Updated May 14, 2020

• nf-wr

  WR extension module for Nextflow
  Groovy Apache-2.0 0 0 1 0 Updated May 1, 2020

• vscode-language-nextflow

  Nextflow language support for Visual Studio Editor

  nextflow vscode-extension
  MIT 5 2 1 0 Updated Mar 27, 2020

• atom-language-nextflow

  Nextflow syntax highlighter for Atom editor

  nextflow atom-package
  MIT 3 8 0 0 Updated Mar 27, 2020

• rnatoy

  A proof of concept RNA-Seq pipeline with Nextflow

  docker rna-seq nextflow rnaseq
  Nextflow 26 24 1 0 Updated Feb 29, 2020

• blast-example

  A basic blast pipeline using nextflow
  Nextflow 4 6 1 0 Updated Feb 28, 2020

• capsule-maven

  Forked from puniverse/capsule-maven

  Runtime dependency-resolution caplet
  Java 6 0 0 0 Updated Dec 22, 2019

• capsule

  Forked from puniverse/capsule

  Dead-Simple Packaging and Deployment for JVM Apps
  Java EPL-1.0 90 1 0 0 Updated Dec 21, 2019

• nfcamp-tutorial

  A tutorial for DLS-2 migration
  Nextflow MPL-2.0 3 7 0 0 Updated Sep 16, 2019

• sublime-nextflow

  Forked from peterk87/sublime-nextflow

  Nextflow workflow syntax highlighting and snippets for Sublime Text 3
  MIT 3 0 0 0 Updated Mar 27, 2019

• nf-hack18

  Nextflow workshop 2018 -- Training pages -> https://nextflow-io.github.io/nf-hack18/

  nextflow
  Nextflow 6 14 5 0 Updated Mar 24, 2019

• trademark

  Nextflow logo & trademark policy

  nextflow
  0 1 0 0 Updated Mar 20, 2019

• stress

  Docker container used to run Nextflow stress metrics
  C Apache-2.0 1 0 0 0 Updated Feb 6, 2019

• GPars

  Forked from GPars/GPars

  The GPars concurrency and parallelism framework for the JVM
  Groovy 50 0 0 0 Updated Aug 27, 2018

• cwl2nxf

  Import a CWL workflow specification to Nextflow script (experimental)
  Groovy Apache-2.0 4 20 10 0 Updated Aug 9, 2018

• gccbosc18-training

  Documentation for Nextflow training at GCC/BOSC 2018

  nextflow
  Nextflow MIT 1 6 0 0 Updated Jun 26, 2018

• rmghc-2018

  Nextflow Workshop at Rocky Mountain Genomics HackCon 2018

  genomics nextflow hackathon containers workflows
  HTML 2 10 0 0 Updated Jun 19, 2018

• nf-hack17-tutorial

  Nextflow basic tutorial for newbie users

  docker bioinformatics tutorial genomics nextflow singularity
  Nextflow 11 23 0 0 Updated Jun 17, 2018

• picocli

  Forked from remkop/picocli

  Annotation-based Java command line parsing library. Usage help with ANSI colors. Autocomplete. Nested subcommands. Easily included as source to avoid adding dependencies.
  Java Apache-2.0 214 0 0 0 Updated Feb 27, 2018

• bash

  Bash minimal docker image

  docker
  Makefile MIT 0 0 0 0 Updated Feb 25, 2018

• rnaseq-encode-nf

  Forked from fstrozzi/rnaseq-encode-nf

  An example RNA-seq pipeline with Nextflow and using public ENCODE data

  genomics nextflow rnaseq
  HTML 1 7 0 0 Updated Jan 3, 2018