Here are
22 public repositories
matching this topic...
QuPath - Bioimage analysis & digital pathology
This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biological imaging.
Updated
Apr 9, 2020
Jupyter Notebook
Mastodon – a large-scale tracking and track-editing framework for large, multi-view images.
Fiji plugin for object(s) detection using template(s) matching
Updated
Feb 15, 2021
Python
ImageJ macros and scripts written at the imaging facility MRI
Updated
May 3, 2021
ImageJ Macro
C++ library and command-line software for processing and analysis of terabyte-scale volume images locally or on a computing cluster.
Tool for segmentation in bioimaging
Updated
May 3, 2021
Python
SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.
Fast reconstruction of spatial networks from bioimages.
Updated
Apr 26, 2021
Python
Source code and workflow protocols for SOCR 3D Cell Morphometry Project
MRI ImageJ related python (jython) module.
Updated
Sep 29, 2020
Python
Quantifying the dynamics of long-range cell-cell mechanical communication paper code
Updated
Feb 22, 2021
Python
PhD dissertation: Methods for Automated Neuron Image Analysis candidate: Miroslav Radojevic Publisher: Erasmus University ISBN 978-94-6361-204-3
Updated
May 28, 2020
Jupyter Notebook
This is the repository for an image-processing focussed self-taught course with a slight focus on bioimage analysis.
Updated
Jun 24, 2020
Jupyter Notebook
Updated
Jan 10, 2018
Java
Some CellProfiler plugins.
Updated
Jan 24, 2020
Python
Extraction and tracking of dynamic biopolymer networks.
GUI for bioimage analysis
Updated
Dec 18, 2018
Python
Code for the article In toto imaging and reconstruction of post-implantation mouse development at the single-cell level
Updated
Sep 17, 2018
Python
Updated
Jul 6, 2020
Python
Simple devices and software to facilitate microscopy, electrophysiology, and microbiology techniques for systems neuroscience research. Easy to fabricate and use with low-cost 3D Printers.
Updated
Sep 11, 2019
MATLAB
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