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parameter-estimation

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CasADi is a symbolic framework for numeric optimization implementing automatic differentiation in forward and reverse modes on sparse matrix-valued computational graphs. It supports self-contained C-code generation and interfaces state-of-the-art codes such as SUNDIALS, IPOPT etc. It can be used from C++, Python or Matlab/Octave.

  • Updated Sep 8, 2020
  • C++
AMICI
paulstapor
paulstapor commented Jul 16, 2020

Currently, values for the llh, gradient, the computed trajectories of states and observables, or the sensitivities are checked in unit tests.
Unfortunately, some bugs, such as incorrect Jacobians or switched minus signs in the Newton solver, will not necessarily affect those quantities. However, they will substantially impact solver performance, by causing way too many steps to be taken. Hence, w

pyPESTO
yannikschaelte
yannikschaelte commented May 31, 2020

Matplotlib offers various ways of defining colors, in particular via the standard colors cycle ('C0-10'), as hex or as a RBGA tuple https://matplotlib.org/3.1.1/tutorials/colors/colors.html. If I see it correctly, the pypesto visualization routines currently only allow RGBA values. It would be preferable to allow for any color input. This should be rather easily possible by rewriting how passed co

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