Galaxy Project

Repositories

• galaxy

  Data intensive science for everyone.

  docker science workflow bioinformatics pipeline genomics workflow-engine
  Python 655 781 1,345 (129 issues need help) 165 Updated Nov 12, 2020

• usegalaxy-tools

  usegalaxy.* common tools
  Shell 21 7 6 9 Updated Nov 11, 2020

• tools-iuc

  Tool Shed repositories maintained by the Intergalactic Utilities Commission

  tools usegalaxy hacktoberfest toolshed wrappers iuc
  HTML MIT 266 86 172 (4 issues need help) 130 Updated Nov 11, 2020

• galaxy-hub

  Galaxy Community Hub

  community documentation home homepage hub usegalaxy
  Pug 153 42 39 (1 issue needs help) 1 Updated Nov 11, 2020

• SARS-CoV-2

  Ongoing analysis of COVID-19 using Galaxy, BioConda and public research infrastructures

  usegalaxy 2019-ncov coronavirus covid covid19 covid-2019
  Jupyter Notebook MIT 64 105 7 7 Updated Nov 11, 2020

• galaxy-docker-k8s

  An Ansible playbook for building a Galaxy container for Kubernetes.
  HTML MIT 6 4 1 0 Updated Nov 11, 2020

• gxformat2

  Galaxy Workflow Format 2
  Python 3 4 5 1 Updated Nov 11, 2020

• training-material

  A collection of Galaxy-related training material

  training tutorial materials ngs metagenomics rnaseq proteomics
  HTML MIT 409 167 92 33 Updated Nov 11, 2020

• planemo

  Command-line utilities to assist in developing Galaxy and Common Workflow Language artifacts - including tools, workflows, and training materials.

  cli sdk click usegalaxy hacktoberfest commonwl
  Python 65 57 221 (14 issues need help) 8 Updated Nov 11, 2020

• bioblend

  A Python library for interacting with Galaxy and CloudMan APIs

  api api-client usegalaxy cloudman hacktoberfest
  Python MIT 91 69 38 9 Updated Nov 11, 2020

• galaxy-language-server

  Galaxy language server to help in Galaxy (https://galaxyproject.org/) tool wrappers development (work in progress).
  Python Apache-2.0 1 7 3 (1 issue needs help) 0 Updated Nov 11, 2020

• galaxy-helm

  Minimal setup required to run Galaxy under Kubernetes
  Shell MIT 27 20 19 8 Updated Nov 11, 2020

• ansible-galaxy

  An Ansible role for managing a Galaxy server
  HTML 56 38 14 6 Updated Nov 10, 2020

• admin-training

  Galaxy Admin Training

  training nginx ansible development admin tools cluster
  Shell 55 50 13 0 Updated Nov 9, 2020

• tools-devteam

  Contains a set of Galaxy Tools mostly written by the Galaxy Team.

  tools usegalaxy toolshed
  Python 83 34 57 11 Updated Nov 9, 2020

• starforge-recipes

  Build recipes for Galaxy Starforge
  Shell MIT 6 0 7 2 Updated Nov 9, 2020

• dunovo

  Forked from NickSto/dunovo

  Reference-free duplex sequencing pipeline.

  science bioinformatics genomics biology sequencing
  Python 5 13 16 2 Updated Nov 6, 2020

• video-lectures

  Forked from jxtx/covid-lessons
  CSS 2 0 0 0 Updated Nov 5, 2020

• ansible-galaxy-extras

  Ansible roles to configure assorted compontents for an Ubuntu VM or container configured with https://github.com/galaxyproject/ansible-galaxy with production services including nginx, uwsgi, supervisor, protftp, and slurm.
  Shell 36 10 18 7 Updated Nov 5, 2020

• usegalaxy-playbook

  Ansible Playbook for usegalaxy.org

  python ansible playbook usegalaxy
  Shell AFL-3.0 15 21 103 (1 issue needs help) 3 Updated Nov 4, 2020

• ansible-galaxy-tools

  An Ansible role for automated installation of tools from a Tool Shed into Galaxy.

  ansible-role
  Python MIT 33 12 14 2 Updated Nov 3, 2020

• ephemeris

  Library for managing Galaxy plugins - tools, index data, and workflows.
  Python 29 18 18 (2 issues need help) 3 Updated Nov 2, 2020

• cloudman

  Easily create and manage compute clusters on any Cloud.

  usegalaxy cloudman hacktoberfest
  Python 22 31 4 (1 issue needs help) 1 Updated Nov 1, 2020

• gx-it-proxy
  1 package JavaScript 3 1 1 0 Updated Oct 28, 2020

• cloudlaunch-registry

  An application registry for CloudLaunch
  1 0 0 2 Updated Oct 28, 2020

• cloudlaunch

  Easily launch cloud applications.

  python django angular cloud multi-cloud
  Python 36 38 29 0 Updated Oct 28, 2020

• screencasts
  MIT 0 0 0 0 Updated Oct 27, 2020

• toolshed

  WIP of The Galaxy Toolshed split from the Galaxy codebase
  Python 3 0 0 3 Updated Oct 27, 2020

• infrastructure-playbook

  Ansible playbook for managing Galaxy infrastructure. For the playbook managing Galaxy itself, see https://github.com/galaxyproject/usegalaxy-playbook/
  HTML MIT 10 5 5 7 Updated Oct 27, 2020

• awesome-galaxy

  Awesome resources related to Galaxy project

  hacktoberfest
  3 9 0 0 Updated Oct 23, 2020