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@MarioniLab

Marioni Laboratory

A central repository for projects in John Marioni's group
  • Cambridge, United Kingdom

Popular repositories

  1. miloR Public

    R package implementation of Milo for testing for differential abundance in KNN graphs

    R 131 6

  2. EmbryoTimecourse2018 Public

    Data and analysis scripts for our Embryo Timecourse paper.

    HTML 50 31

  3. DropletUtils Public

    Clone of the Bioconductor repository for the DropletUtils package.

    R 40 20

  4. MNN2017 Public archive

    Code for the MNN manuscript figures

    HTML 39 18

  5. scran Public

    Clone of the Bioconductor repository for the scran package.

    R 32 20

  6. FurtherMNN2018 Public

    Code for further development of the mutual nearest neighbours batch correction method, as implemented in the batchelor package.

    R 18 5

Repositories

  • sagenet Public

    Spatial reconstruction of dissociated single-cell data

    Jupyter Notebook 2 MIT 0 0 0 Updated Jan 18, 2022
  • miloR Public

    R package implementation of Milo for testing for differential abundance in KNN graphs

    R 131 GPL-3.0 6 12 1 Updated Jan 18, 2022
  • StabMap Public

    Mosaic single cell data integration using non-overlapping features

    R 1 0 0 0 Updated Jan 12, 2022
  • DropletUtils Public

    Clone of the Bioconductor repository for the DropletUtils package.

    R 40 20 12 0 Updated Jan 8, 2022
  • CELLOseq Public

    Transposable element expression at unique loci in single cells with CELLO-seq

    Shell 4 1 0 0 Updated Nov 15, 2021
  • scran Public

    Clone of the Bioconductor repository for the scran package.

    R 32 20 7 1 Updated Nov 12, 2021
  • geneBasisR Public

    R package for gene selection using k-NN graphs.

    R 11 MIT 1 0 0 Updated Nov 11, 2021
  • am_geneBasis Public

    prediction of marker genes for cell typing and spatial gradients from scRNA-seq

    Jupyter Notebook 1 1 0 0 Updated Oct 18, 2021
  • geneBasis_tutorials Public

    quick folder to have tutorials stored for geneBasis

    HTML 0 0 0 0 Updated Oct 1, 2021
  • milo Public

    Differential abundance on KNN graphs

    HTML 1 GPL-3.0 0 2 0 Updated Aug 24, 2021
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