Here are
104 public repositories
matching this topic...
📖 🔬 ☕ BioJava is an open-source project dedicated to providing a Java library for processing biological data.
Updated
Jul 24, 2020
Java
Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different domains of protein biology.
Updated
Jun 26, 2020
Python
A Python API for the RCSB Protein Data Bank (PDB)
Updated
Jun 9, 2020
Python
Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different domains of protein biology. (DEPRECATED)
Updated
Jan 2, 2020
Python
LAMBDA – the Local Aligner for Massive Biological DatA
Methods for the parallel and distributed analysis and mining of the Protein Data Bank using MMTF and Apache Spark.
Updated
May 18, 2020
Python
Inference of couplings in proteins and RNAs from sequence variation
An HP 2D Lattice Environment with a Gym-like API for the Protein Folding Problem
Updated
Jul 19, 2020
Python
Variational autoencoder for protein sequences - add metal binding sites and generate sequences for novel topologies
Updated
Nov 26, 2019
Python
An R package to calculate indices and theoretical physicochemical properties of peptides and protein sequences.
Visually explore covariation in protein families
Updated
Dec 8, 2019
JavaScript
Comprehensive toolkit for generating various numerical features of protein sequences
Paratope Prediction using Deep Learning
Updated
Jan 28, 2020
Python
An experimental deep learning & genotype network-based system for predicting new influenza protein sequences.
Updated
Apr 18, 2020
Jupyter Notebook
Methods for the parallel and distributed analysis and mining of the Protein Data Bank using MMTF and Apache Spark.
Molecular informatics toolkit with a comprehensive integration of bioinformatics and cheminformatics tools for drug discovery.
Neural networks for amino acid sequences
Updated
Feb 26, 2018
Python
Recurrent Geometric Network in Pytorch
Updated
Jul 7, 2018
Jupyter Notebook
Genomic and Proteomic data exploration and pattern mining
Updated
Jul 20, 2020
Scheme
PyMod 3 - sequence similarity searches, multiple sequence/structure alignments, and homology modeling within PyMOL.
Updated
Jun 22, 2020
Python
programs and scripts, mainly python, for analyses related to nucleic or protein sequences
Updated
May 12, 2020
Python
A high performance tool to identify orthologs and paralogs across genomes
Updated
May 5, 2020
Python
A suite of unique bioinformatics tools for the brave explorer.
The Protein Feature View - a SVG library for visualising protein annotations
Updated
Sep 18, 2017
JavaScript
State-of-the-art ab initio prediction of 1D protein structure annotations
Prion-Like Amino Acid Composition
Updated
Jan 27, 2020
Java
A case study on Pfam dataset to classify protein families.
Updated
Oct 10, 2019
Jupyter Notebook
A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.
Updated
Jul 20, 2020
Perl
A genetic decypher written in C. A school work of a student at Universidade Metodista de Angola.
Updated
Dec 13, 2017
Roff
Learning hierarchical motif representations for proteins.
Updated
Dec 20, 2017
Python
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