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conda

Here are 402 public repositories matching this topic...

conda / conda

Star

OS-agnostic, system-level binary package manager and ecosystem

conda package-management

Updated Dec 17, 2020
Python

nbdev

fastai / nbdev

Star

Open

Docs Suggestion: Add clearer parameter guidelines for export

2

aronchick commented Dec 9, 2020

In reading through several of the docs, it wasn't clear how to format #export for the purposes of creating a different external file.

It might be nice to here (https://nbdev.fast.ai/export.html#notebook2script) or elsewhere to list some examples for how to add a parameter to #export

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good first issue

dephell

dephell / dephell

Star

Open

APPDATA fallback code for Windows?

1

jhermann commented Jan 27, 2020

While inspecting the installer, I noticed the fallbacks for Linux / OSX when appdirs isn't available (in data_dir()).

Wouldn't it make sense to add an if for Windows based on %APPDATA% or %LOCALAPPDATA%, before resorting to globally installing appdirs?

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enhancement good first issue help wanted

Open

How to start? (CALL FOR COMMUNITY ARTICLES)

17

Open

Forbid to specify `--from` and `--from-format` at the same time.

3

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bioconda / bioconda-recipes

Star

Conda recipes for the bioconda channel.

bioinformatics conda hacktoberfest package-management

Updated Dec 22, 2020
Shell

stack-of-tasks / pinocchio

Star

A fast and flexible implementation of Rigid Body Dynamics algorithms and their analytical derivatives

python c-plus-plus robotics kinematics dynamics automatic-differentiation conda motion-planning ros code-generation urdf rigid-body-dynamics cppad fcl casadi analytical-derivatives pinocchio

Updated Dec 14, 2020
C++

pyamg / pyamg

Star

Algebraic Multigrid Solvers in Python

python c-plus-plus solver conda amg sparse-matrix krylov multigrid pyamg

Updated Nov 24, 2020
Python

conda-incubator / setup-miniconda

Star

Set up your GitHub Actions workflow with conda via miniconda

python package-manager package environment typescript anaconda actions conda yml dependencies miniconda github-actions setup-miniconda

Updated Dec 21, 2020
TypeScript

agkozak / agkozak-zsh-prompt

Star

A fast, asynchronous ZSH prompt with color ASCII indicators of Git, exit, SSH, virtual environment, and vi mode status. Framework-agnostic and customizable.

git macos zsh osx async asynchronous prompt conda zsh-theme virtualenv cygwin msys2 macintosh zsh-prompt git-prompt catalina

Updated Dec 22, 2020
Shell

conansherry / detectron2

Star

detectron2 windows build

windows visual-studio conda win vs detectron2

Updated Jan 12, 2020
Python

mamba-org / gator

Star

Conda environment and package management extension from within Jupyter

jupyter-notebook conda jupyterlab-extension

Updated Dec 14, 2020
Python

Hoohm / dropSeqPipe

Star

A SingleCell RNASeq pre-processing snakemake workflow

yaml picard snakemake pipeline plot conda multiqc star umi reference-genome drop-seq dropseq scrbseq scrb-seq dropseqtools

Updated Dec 2, 2020
R

JuliaPy / Conda.jl

Star

Conda managing Julia binary dependencies

python package-manager julia conda

Updated Nov 2, 2020
Julia

fastai / docker-containers

Star

Docker images for fastai

docker data-science machine-learning conda fastai mlops

Updated Dec 19, 2020
Shell

Docker-Hub-frolvlad / docker-alpine-miniconda3

Star

The smallest Docker image with Miniconda3 (Python 3.7) (~143MB)

python anaconda alpine docker-image conda

Updated Jun 18, 2020
Dockerfile

sarek

nf-core / sarek

Star

Analysis pipeline to detect germline or somatic variants from WGS / targeted sequencing

docker workflow bioinformatics pipeline genomics nextflow cancer reproducible-research containers conda next-generation-sequencing singularity reproducible-science variant-calling somatic germline nf-core

Updated Dec 18, 2020
Nextflow

BCSharp / PSCondaEnvs

Star

Implementation of Conda's activate/deactivate functions in Powershell.

anaconda powershell conda

Updated Feb 4, 2019
PowerShell

libigl / libigl-python-bindings

Star

IGL python bindings

python fast conda easy-to-use geometry-processing

Updated Dec 4, 2020
C++

ESSS / conda-devenv

Star

A conda tool to work with multiple projects in development mode.

anaconda conda hacktoberfest

Updated Dec 7, 2020
Python

bactopia / bactopia

Star

A flexible pipeline for complete analysis of bacterial genomes

nextflow conda bacterial-genomes fastqs

Updated Dec 19, 2020
HTML

Valassis-Digital-Media / conda-mirror

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Mirror upstream conda channels

python conda mirroring team-platform conda-mirror repodata

Updated Jun 26, 2019
Python

louiejtaylor / grabseqs

Star

A utility for easy downloading of reads from next-gen sequencing repositories like NCBI SRA

python bioinformatics ngs conda metagenomics sra ncbi-sra

Updated Mar 30, 2020
Python

conda-incubator / grayskull

Star

Open

[BUG] 'extra' module part is imported on tests, but stripped for requirements

1

step21 commented Aug 27, 2020

Describe the bug
As far as I can tell, sometimes (or always) stuff marked 'extra' is imported on tests, but stripped when processing requirements.

To Reproduce
do grayskull pypi eth-abi

Expected behavior
A recipe with the right imports and requirements.

Environment:

grayskull --version = 0.7.3

Additional context
url https://pypi.org/project/eth-abi/

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bug good first issue

Open

Add possibility to generate python recipes from git repositories

Open

disable compilers when dependencies are extra

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DanielBok / copulae

Star

Multivariate data modelling with Copulas in Python

python data statistics modeling dependency-analysis pypi conda python3 data-analysis copula pypi-packages copula-models copulas dependency-modeling copulae

Updated Dec 22, 2020
Jupyter Notebook

conda-incubator / conda-lock

Star

Lightweight lockfile for conda environments

conda hacktoberfest lockfile

Updated Dec 7, 2020
Python

rvalieris / conda-tree

Star

conda dependency tree helper

conda

Updated Dec 5, 2019
Python

4dn-dcic / tibanna

Star

Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ docker), Snakemake (w/ conda) and custom Docker/shell command.

docker aws bioinformatics snakemake aws-lambda pipelines conda wdl cwl aws-step-function wdl-workflow cwl-workflow snakemake-workflow

Updated Dec 19, 2020
Python

mamba-org / boa

Star

The Fast Conda and Mamba Package Builder

conda mamba conda-packages

Updated Dec 7, 2020
Python

open-ce / open-ce

Star

This repository provides all that you will need in order to build your own copy of the Open-CE environment.

deep-learning tensorflow cuda conda pytorch xgboost deeplearning conda-environment horovod feedstocks

Updated Dec 18, 2020
Python

python-packaging-tutorial / python-packaging-tutorial

Star

Open

Create Logo

jcfr opened Jul 12, 2018

enhancement good first issue help wanted

Open

Move "Installation instructions" and "Testing installation" to website

V-pipe

cbg-ethz / V-pipe

Star

V-pipe is a pipeline designed for analysing NGS data of short viral genomes

bioinformatics snakemake virus ngs sequencing conda bioinformatics-pipeline biohackeu20 biohackcovid20

Updated Dec 9, 2020
Python

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