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837 followers · 2 following · 57

Highlights

  • Arctic Code Vault Contributor

Organizations

@apache @jclouds @bigdatagenomics @HadoopGenomics @lasersonlab @disq-bio @openclimatefix

Pinned

  1. hadoop-book

    Example source code accompanying O'Reilly's "Hadoop: The Definitive Guide" by Tom White

    Makefile 3.2k 2.5k

  2. covid-19-uk-data

    Coronavirus (COVID-19) UK Historical Data

    HTML 169 79

  3. broadinstitute/gatk

    Official code repository for GATK versions 4 and up

    Java 968 387

  4. leveltheplayingfield

    Analysis of school funding in Wales

    R

  5. disq-bio/disq

    A library for manipulating bioinformatics sequencing formats in Apache Spark

    Java 27 10

  6. theislab/scanpy

    Single-Cell Analysis in Python. Scales to >1M cells.

    Python 819 293

2,469 contributions in the last year

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Contribution activity

January 2021

Created 25 commits in 5 repositories
Created 2 repositories

Created a pull request in brentp/cyvcf2 that received 6 comments

Upload wheels and source dist to pypi

This should be what's needed to upload to pypi, modelled on https://github.com/joerick/cibuildwheel/blob/master/examples/github-deploy.yml. I haven…

+34 −0 • 6 comments
Opened 4 other pull requests in 2 repositories
Reviewed 1 pull request in 1 repository
pystatgen/sgkit 1 pull request

Created an issue in dask/dask-cloudprovider that received 3 comments

GCP worker disk size is too low

The 50GB default has very slow read/write speeds (around 7MB/s according to the docs), which causes some workloads to perform very poorly. I sugges…

3 comments
Opened 4 other issues in 1 repository

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