Google Genomics

Tools for working with the Google Genomics API

gcp-variant-transforms Public
GCP Variant Transforms

Python 111 Apache-2.0 49 109 (3 issues need help) 5 Updated Oct 8, 2021
variant-annotation Public
Use cloud technology to annotate human sequence variants in parallel.

Jupyter Notebook 11 Apache-2.0 11 2 2 Updated Jun 4, 2021
readthedocs Public
Documentation for the Google Genomics cookbook.

138 Apache-2.0 48 8 0 Updated May 20, 2020
pipelines-tools Public
Tools for developing and running pipelines with the Genomics API

Go 23 Apache-2.0 12 5 3 Updated Jan 16, 2020
htsget Public
Open Source implementation of the GA4GH htsget protocol for objects stored in Google Cloud Storage

Go 23 Apache-2.0 8 5 (1 issue needs help) 5 Updated Nov 19, 2019
gcp-deepvariant-runner Public
This repository contains a docker container that runs DeepVariant on the Google Cloud Platform.

Python 2 Apache-2.0 5 6 4 Updated Sep 11, 2019
cloudml-examples Public
Examples of using CloudML with genomic data.

Python 16 Apache-2.0 11 0 0 Updated May 24, 2019
beacon-go Public
AppEngine implementation of the Beacon API from the Global Alliance for Genomics and Health written in Go.

Go 2 Apache-2.0 5 1 1 Updated Dec 14, 2018
dataflow-java Public
Google Cloud Dataflow pipelines such as Identity-By-State as well as useful utility classes.

Java 34 Apache-2.0 29 19 (1 issue needs help) 1 Updated Dec 10, 2018
ga4gh-identity Public
GA4GH Researcher Identity Tools

Go 2 Apache-2.0 1 3 0 Updated Oct 15, 2018

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