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quality-check

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The package RNAseqAnalysis does the complete analysis of RNA seq data starting from raw reads. It provides the user with differnt functions like generation of qc report, filtering, assembly and GO-term annotation, differential expression analysis and heatmap generation, and Alternative splicing-site prediction

  • Updated Sep 21, 2018
  • R

This application will provide a recommendation on which axis you should flip the bvecs of your data, if it is necessary. It will perform fiber tracking using 4 different gradient flip options (no flip, x flip, y flip, and z flip) and report the most likely flip needed for your data. The flip recommendation is made based on the flip direction with the highest number of long fibers.

  • Updated Sep 11, 2018
  • MATLAB

CSV Data Validator is a tool to validate csv file. It parse csv and validate the data with .hdr(csv meta data) before ingestion to Data Lake. It checks data file availability for every day load and validate data with respective meta data like File Size, Checksum, Delimiter, Record count etc. It ensure landed data conformity before give go ahead for data ingestion to Data Lake. It generate complete stats or error log.

  • Updated Jan 6, 2019
  • Java

This service creates 4 figures of each AFQ tract: axial, left sagittal, right sagittal, coronal. Please choose the t1 image slices you would like displayed. The default slices work well for the HCP t1 images if they have not been re-ACPC aligned. If you have ACPC aligned your t1 images using the ACPC alignment app on Brain Life the following values are a good starting point: coronal = 105, sagittal = 89, axial = 65. The img_min and img_max values refer to the value range displayed for the t1 image. The value range is calulated as follow (mean + img_min * std, mean + img_max * std). The default values are a good starting place, adjust them if your t1 is too dark or too light.

  • Updated Aug 8, 2020
  • Python

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