Biomedical Informatics Research and Data Science @ Dartmouth

Repositories

• WSI-PLP

  Whole Slide Image based Patient Level Prediction (WSI-PLP)
  Python GPL-3.0 0 0 0 0 Updated Jun 6, 2021

• HistoGAN

  Code for "Generative Image Translation for Data Augmentation in Colorectal Histopathology Images" full paper at ML4H Workshop at NeurIPS 2019.

  data-science machine-learning artificial-intelligence medical-imaging gan cyclegan medical-image-analysis
  Python GPL-3.0 18 59 0 0 Updated Feb 3, 2021

• deepslide

  Code for the Nature Scientific Reports paper "Pathologist-level classification of histologic patterns on resected lung adenocarcinoma slides with deep neural networks." A sliding window framework for classification of high resolution whole-slide images, often microscopy or histopathology images.

  cancer resnet microscopy sliding-windows lung wsi medical-image-analysis
  Python GPL-3.0 105 337 0 0 Updated Dec 7, 2020

• MORE

  Code for "Multi-Ontology Refined Embeddings (MORE): A Hybrid Multi-Ontology and Corpus-based Semantic Representation Model for Biomedical Concepts" in the Journal of Biomedical Informatics.

  tensorflow semantic-similarity distributional-semantics biomedical-semantic-representation biomedical-ontology
  Python GPL-3.0 1 3 0 0 Updated Oct 6, 2020

• HealthTranscriptAnnotator

  Annotates concepts in patient-physician office visit transcripts.
  Java 0 0 0 0 Updated Jul 17, 2020

• DifficultyTranslation

  Code for "Difficulty Translation in Histopathology Images" full paper at Artificial Intelligence in Medicine (AIME) 2020.

  gan image-classification resnet cyclegan medical-image-analysis resnet-18 histopathology
  Python GPL-3.0 0 0 0 0 Updated Jul 7, 2020

• 3dMRISegmentation

  Code for NeuroImage: Clinical paper "Automatic post-stroke lesion segmentation on MR images using 3D residual convolutional neural network."

  pytorch mri segmentation medical-image-analysis 3d-resnet ischemic-stroke
  Python GPL-3.0 6 20 0 0 Updated Jun 9, 2020

• medical-image-preprocessing

  Functions for pre-processing large images
  Python GPL-3.0 1 3 0 0 Updated Dec 5, 2019

• titan-rtx-benchmark
  1 5 0 0 Updated Jan 22, 2019