Workflows and interfaces for neuroimaging packages

A list of tutorials and other resources useful to learn open science and neuroimaging, EEG and MEG

Pydra Dataflow Engine

Software platform for clinical neuroimaging studies

Free cloud platform for secure neuroscience data analysis.

Python3 library to format physiological files in BIDS. At the moment, it supports Acqknowledge and Labchart. BrainHack participants, check the issues with the BrainHack labels!

Working repository to turn the COBIDAS guidelines to report methods and results in neuroimaging into a user friendly checklist

Brainsprite turns a sprite of brain slices into a 3D interactive web viewer

A virtual optogenetics laboratory

A permanent online space for the community to meet&matcha, work&watermelon, catch up&coffee.

Gaussian-Processes Surrogate Optimisation in python

The Brain Activity Flow ("Actflow") Toolbox. Tools to quantify the relationship between connectivity and task activity through network simulations and machine learning prediction. Helps determine how connections contribute to specific brain functions.

Applying style transfer to convert multi-modal MRI images to have a T1 like contrast.

Open resource exchange platform for non-human primate neuroimaging

A fuzzy ecosystem for evaluating the stability of your computational tools.

A half-serious project to generate **very** serious brain explosions.

Non-linear warps between common rhesus macaque brain templates

anatomical fiducials protocol adapted for macaques

BrainSpace is an open-access toolbox that allows for the identification and analysis of gradients from neuroimaging and connectomics datasets | available in both Python and Matlab |

Infrastructure and code for the dandiarchive

Add Jupyter notebook as a service to XNAT

A project intended to bring context to embodied computational agents. Layered brains from hybrid models!

Interactive multimodal atlas of the development of the ferret brain.

scorEpochs: a computer aided scoring tool for resting-state M/EEG epochs

Tool kit for exploratory data analysis and usage of SwipesForScience JSON data, complete with anonymous sample data.

Reconstruct visual stimuli from EEG data using Deep Learning

Behavioural and Neural Mechanisms of Memory Replay in Monkeys

TRAMPOLINO (TRActography Meta-Pipeline cOmmand LINe tOol) is a CLI for brain tractography. It leverages Nipype to offer an immediate way to reconstruct an orientation distribution function, use it to track the streamlines and eventually filter them, all using existing software toolboxes.

Script to Export Freesurfer-based Parcellation/Segmentation Stats and Provenance as JSON-LD and NIDM