Galaxy Project

Repositories

• galaxy

  Data intensive science for everyone.

  docker science workflow bioinformatics pipeline genomics workflow-engine
  Python 671 798 1,436 (133 issues need help) 147 Updated Feb 10, 2021

• tools-iuc

  Tool Shed repositories maintained by the Intergalactic Utilities Commission

  tools usegalaxy hacktoberfest toolshed wrappers iuc
  HTML MIT 272 89 176 (4 issues need help) 131 Updated Feb 10, 2021

• ansible-cvmfs

  An Ansible role for installing and configuring CernVM-FS (CVMFS)
  C 7 5 0 3 Updated Feb 9, 2021

• SARS-CoV-2

  Ongoing analysis of COVID-19 using Galaxy, BioConda and public research infrastructures

  usegalaxy 2019-ncov coronavirus covid covid19 covid-2019
  Jupyter Notebook MIT 67 109 7 8 Updated Feb 9, 2021

• bioblend

  A Python library for interacting with Galaxy and CloudMan APIs

  api api-client usegalaxy cloudman hacktoberfest
  Python MIT 95 71 38 9 Updated Feb 9, 2021

• training-material

  A collection of Galaxy-related training material

  training tutorial materials ngs metagenomics rnaseq proteomics
  HTML MIT 434 182 95 33 Updated Feb 9, 2021

• infrastructure-playbook

  Ansible playbook for managing Galaxy infrastructure. For the playbook managing Galaxy itself, see https://github.com/galaxyproject/usegalaxy-playbook/
  HTML MIT 10 6 5 6 Updated Feb 9, 2021

• iwc

  Intergalactic Workflow Commission
  5 6 10 3 Updated Feb 9, 2021

• galaxy-helm

  Minimal setup required to run Galaxy under Kubernetes
  Python MIT 28 21 19 9 Updated Feb 9, 2021

• galaxy-hub

  Galaxy Community Hub

  community documentation home homepage hub usegalaxy
  Pug 158 45 42 (1 issue needs help) 0 Updated Feb 9, 2021

• usegalaxy-playbook

  Ansible Playbook for usegalaxy.org

  python ansible playbook usegalaxy
  Shell AFL-3.0 15 21 100 (1 issue needs help) 3 Updated Feb 8, 2021

• ansible-galaxy-extras

  Ansible roles to configure assorted compontents for an Ubuntu VM or container configured with https://github.com/galaxyproject/ansible-galaxy with production services including nginx, uwsgi, supervisor, protftp, and slurm.
  HTML 38 11 18 8 Updated Feb 8, 2021

• ansible-galaxy-os

  An Ansible role is for configuring the base operating system useful for running Galaxy.
  MIT 16 3 1 2 Updated Feb 8, 2021

• usegalaxy-tools

  usegalaxy.* common tools
  Shell 23 7 7 8 Updated Feb 8, 2021

• planemo-ci-action

  Installs planemo and discovers changed repositories of tools or workflows
  Shell MIT 2 2 2 0 Updated Feb 7, 2021

• planemo

  Command-line utilities to assist in developing Galaxy and Common Workflow Language artifacts - including tools, workflows, and training materials.

  cli sdk click usegalaxy hacktoberfest commonwl
  Python 68 58 231 (14 issues need help) 10 Updated Feb 6, 2021

• ansible-slurm

  Ansible role for installing and managing the Slurm Workload Manager
  HTML 15 14 3 3 Updated Feb 3, 2021

• galaxy-language-server

  Galaxy language server to help in Galaxy (https://galaxyproject.org/) tool wrappers development (work in progress).
  Python Apache-2.0 3 9 10 (1 issue needs help) 1 Updated Feb 3, 2021

• pulsar

  Distributed job execution application built for Galaxy
  Python Apache-2.0 35 30 54 (5 issues need help) 5 Updated Feb 2, 2021

• admin-training

  Galaxy Admin Training

  training nginx ansible development admin tools cluster
  Shell 60 54 13 0 Updated Feb 2, 2021

• ansible-galaxy

  An Ansible role for managing a Galaxy server
  HTML 59 41 15 3 Updated Feb 1, 2021

• cloudman

  Easily create and manage compute clusters on any Cloud.

  usegalaxy cloudman hacktoberfest
  Python 22 32 4 (1 issue needs help) 1 Updated Jan 31, 2021

• cloudlaunch

  Easily launch cloud applications.

  python django angular cloud multi-cloud
  Python 36 38 26 0 Updated Jan 31, 2021

• planemo-monitor

  Planemo scripting to monitor repositories and register tool containers.
  Shell 8 3 2 0 Updated Jan 31, 2021

• starforge-recipes

  Build recipes for Galaxy Starforge
  Shell MIT 6 0 6 0 Updated Jan 27, 2021

• tools-devteam

  Contains a set of Galaxy Tools mostly written by the Galaxy Team.

  tools usegalaxy toolshed
  Python 85 34 55 11 Updated Jan 25, 2021

• galaxy-test-data

  Test data files used by Galaxy.
  HTML 7 1 0 1 Updated Jan 22, 2021

• ansible-postgresql

  An Ansible role for managing a PostgreSQL server
  Shell 35 61 5 2 Updated Jan 19, 2021

• ansible-miniconda

  An Ansible role for managing a Miniconda installation.
  0 1 0 0 Updated Jan 19, 2021

• ci-testing

  This repository will be deleted - ignore.
  0 0 0 0 Updated Jan 19, 2021