The Blue Brain Project

Repositories

• spack

  Forked from spack/spack

  A flexible package manager that supports multiple versions, configurations, platforms, and compilers.
  Python 1,200 7 2 (1 issue needs help) 17 Updated Feb 10, 2021

• CoreNeuron

  Simulator optimized for large scale neural network simulations.

  neural-network hpc neuroscience simulation-framework neuron supercomputing compartmental
  C++ BSD-3-Clause 27 75 61 (1 issue needs help) 7 Updated Feb 10, 2021

• libsonata

  A python and C++ interface to the SONATA format

  simulation sonata modelling circuit
  C++ LGPL-3.0 9 4 13 (1 issue needs help) 0 Updated Feb 10, 2021

• snap

  The Blue Brain Pythonic Simulation and Network Analysis Productivity layer

  analysis simulation modeling
  Python LGPL-3.0 2 8 3 4 Updated Feb 10, 2021

• MorphIO

  A python and C++ library for reading and writing neuronal morphologies

  python morphology neurons neuron glia mitochondria reticulum
  C++ LGPL-3.0 11 15 27 (1 issue needs help) 9 Updated Feb 10, 2021

• nexus-web

  Nexus Web is the interface of Blue Brain Nexus

  react redux nodejs javascript typescript nexus storybook
  TypeScript 2 8 0 3 Updated Feb 10, 2021

• nexus

  Blue Brain Nexus - A knowledge graph for data-driven science

  scala nexus provenance knowledge-graph shacl
  Scala Apache-2.0 46 167 252 4 Updated Feb 10, 2021

• hpc-coding-conventions
  CMake 1 6 13 0 Updated Feb 10, 2021

• atlas_alignment

  Blue Brain multi-modal registration and alignment toolbox

  machine-learning computer-vision deep-learning image-registration
  Python LGPL-3.0 0 2 2 0 Updated Feb 10, 2021

• NeuroR

  A collection of tools to repair morphologies
  AGS Script LGPL-3.0 3 3 1 2 Updated Feb 10, 2021

• eFEL

  Electrophys Feature Extraction Library

  python neuroscience computational-neuroscience neurons electrophysiology
  C++ 32 44 15 1 Updated Feb 10, 2021

• nexus-forge

  Building and Using Knowledge Graphs made easy

  data-science rdf knowledge-graph json-ld data-management shacl knowledge-engineering
  Python 7 14 13 1 Updated Feb 10, 2021

• Brayns

  Visualizer for large-scale and interactive ray-tracing of neurons

  python cloud async interactive websockets visualisation neuroscience
  C++ 41 228 15 3 Updated Feb 10, 2021

• nmodl

  Code Generation Framework For NEURON MODeling Language

  hpc dsl neuroscience compilers code-generation neuron-simulator nmodl
  C++ 7 25 99 (12 issues need help) 2 Updated Feb 10, 2021

• plotly-helper
  Python LGPL-3.0 2 0 2 0 Updated Feb 9, 2021

• MVDTool

  Parser and command line tool for MVD file format
  C++ 5 1 3 3 Updated Feb 9, 2021

• EMSim

  EMSim is a library that compute different electro-magnetic effects like LPF and VSD.
  C++ LGPL-3.0 1 0 0 0 Updated Feb 9, 2021

• libsonatareport
  C++ 0 0 0 1 Updated Feb 9, 2021

• morph-tool
  AGS Script LGPL-3.0 5 3 2 0 Updated Feb 9, 2021

• homebrew-tap
  Ruby 0 0 0 0 Updated Feb 8, 2021

• NeuroMorphoVis

  A lightweight, interactive, extensible and cross-platform framework for building, visualizing and analyzing digital reconstructions of neuronal morphology skeletons extracted from microscopy stacks.

  morphologies neurons blender-addon neural-modeling mesh-reconstruction soma-reconstruction morphology-analysis
  Python 17 71 32 (3 issues need help) 0 Updated Feb 5, 2021

• BluePyOpt

  Blue Brain Python Optimisation Library

  python cross-platform genetic-algorithm biological-simulations neuroscience computational-neuroscience evolutionary-algorithms
  Python 73 139 6 2 Updated Feb 5, 2021

• HighFive

  HighFive - Header-only C++ HDF5 interface
  C++ BSL-1.0 86 325 45 (1 issue needs help) 5 Updated Feb 4, 2021

• Long-range-micro-connectome

  BlueBrain's recipe writer to parameterize structure and logic of a mouse whole-neocortex connectome
  Python BSD-3-Clause 0 8 1 0 Updated Feb 3, 2021

• NeuroM

  Neuronal Morphology Analysis Tool

  python morphologies neurons
  Jupyter Notebook BSD-3-Clause 38 66 44 14 Updated Feb 3, 2021

• Brion-wheels
  Shell 2 0 0 0 Updated Jan 28, 2021

• MOOC-neurons-and-synapses-2017

  Reference data for the "Simulation Neuroscience:Neurons and Synapses" Massive Online Open Course
  Jupyter Notebook 19 32 10 0 Updated Jan 28, 2021

• Brion

  Blue Brain C++ File IO Library

  synapse
  C++ 21 18 12 0 Updated Jan 27, 2021

• TMD
  Python 17 9 5 3 Updated Jan 26, 2021

• BluePyEfe

  BluePyEfe: Blue Brain Python E-feature extraction
  Python 7 6 0 0 Updated Jan 25, 2021