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KwanLab / Autometa

Star 22
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Split input fasta file, smartly

chasemc
chasemc commented Oct 18, 2021

This might only be important with quite large metagenomes and even then probably will still not be the slow step even if uneven.
Currently, when running in parallel, the input contigs are naively split/chunked into x-number of files.
We had discussed before that it might be good to split contigs a bit more evenly into files based on contain length so that computation will be a bit more even la

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enhancement good first issue
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Vini2 / MetaCoAG

Star 17
Open

[Feature Request] Custom marker sets as an argument

8
jolespin
jolespin commented Sep 12, 2021

Hi there! I was hoping that you would eventually make an actual binning tool after I read your GraphBin papers! Looking forward to using this.

One aspect that many binners are lacking is their ability to handle fungus, protists, and sometimes CPR. Though, there's actually decent marker sets for these.

**Would it be possible to include a custom HMM set as an argument for binning tool so we

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enhancement good first issue

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