Democratizing Deep-Learning for Drug Discovery, Quantum Chemistry, Materials Science and Biology
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Mar 26, 2021 - Python
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biology
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Project Home repo for Central Dockerfile and Project-wide issues
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Feb 25, 2021 - Python
Scripts to download genomes from the NCBI FTP servers
python
bioinformatics
genomics
command-line
biology
genbank
ncbi-taxonomy
ncbi
refseq-genomes-belonging
bacterial-refseq-genomes
download-genomes
fungal-genomes
genbank-format
mick-scripts
older-versions
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Sep 1, 2020 - Python
3d engine implementation in DNA code!
biology
dna
chemical-kinetics
cube
3d
chemical-reaction-networks
molecular-biology
3d-engine
chemical-reactions
raymarching
in-vitro
piperine
strand-displacement
molecular-programming
real-reactive-programming
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Nov 29, 2020
Chainer Chemistry: A Library for Deep Learning in Biology and Chemistry
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Oct 23, 2020 - Python
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Jan 3, 2020
keiranmraine
commented
Sep 28, 2016
Is this on anyone's radar? I know it's a simple item to add directly
Java utilities for Bioinformatics
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Mar 22, 2021 - Java
Therapeutics Data Commons: Machine Learning Datasets and Tasks for Therapeutics
machine-learning
bioinformatics
chemistry
cheminformatics
biology
drug-discovery
datasets
biomedicine
therapeutics
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Mar 26, 2021 - Jupyter Notebook
Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
bioinformatics
snps
medicine
genomics
genome
cancer
biology
vcf
ensembl
medical
cancer-genomics
genome-annotation
proteomics
gtf
bed
cancer-genomes
genome-sequencing
genome-browser
genomes
csv-parser
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Sep 21, 2020 - Python
[DEPRECATED] Bioinformatics and Computational Biology Infrastructure for Julia
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May 27, 2020 - Julia
A taxonomic toolbelt for R
api
data
r
nomenclature
taxonomy
biology
api-wrapper
rstats
r-package
biodiversity
darwincore
taxize
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Feb 19, 2021 - R
A powerful open source data warehouse system
python
java
api
open-source
clojure
opensource
bioinformatics
genomics
genetics
clojurescript
biology
perl
postgresql
lgplv3
tomcat
data-visualization
data-warehouse
data-visualisation
webservices
tomcat8
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Mar 26, 2021 - Java
An interactive heatmap visualization built using D3.js
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Jan 13, 2021 - JavaScript
Ten Quick Tips for Deep Learning in Biology
data-science
machine-learning
bioinformatics
deep-learning
genomics
biology
computational-biology
manuscript
manubot
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Mar 18, 2021 - HTML
Curated (meta)list of resources for Biology.
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Aug 20, 2020
Chemical reaction network and systems biology interface for scientific machine learning (SciML). High performance, GPU-parallelized, and O(1) solvers in open source software
biology
dsl
systems-biology
ode
reaction-network
differential-equations
sde
chemical-reactions
gillespie-algorithm
systems-biology-simulation
rate-laws
scientific-machine-learning
sciml
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Mar 26, 2021 - Julia
Protein order and disorder data for Keras, Tensor Flow and Edward frameworks with automated update cycle made for continuous learning applications.
machine-learning
database
ai
polymer
biology
tensorflow
protein-structure
keras
prediction
dataset
protein
amino-acids
biotechnology
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Jun 29, 2017 - Python
Build, share, and embed visualizations of metabolic pathways.
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Mar 9, 2021 - JavaScript
A Python Library for Conway's Game of Life
game-of-life
biology
cellular-automata
mathematics
simulation-framework
artificial-life
conways-game-of-life
artificial-life-algorithms
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Nov 8, 2020 - Python
poseidon system - open source syringe pumps and microscope for laboratories
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Apr 5, 2020 - Python
INDRA (Integrated Network and Dynamical Reasoning Assembler) is an automated model assembly system interfacing with NLP systems and databases to collect knowledge, and through a process of assembly, produce causal graphs and dynamical models.
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Mar 25, 2021 - Python
Bioinformatics toolkits for manipulating sequence, alignment, and phylogenetic tree files
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Aug 18, 2019 - Python
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May 16, 2018 - Jupyter Notebook
Race and ethnicity Imputation from Disease history with Deep LEarning
machine-learning
bioinformatics
deep-learning
biology
computational-biology
neural-networks
imputation
epidemiology
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Jul 17, 2018 - Python
Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning in Python and Jupyter notebooks.
python
bioinformatics
jupyter
anaconda
simulation
biology
jupyter-notebook
dna
biopython
gel
jupyter-notebooks
anaconda-server-badge
pydna
gel-simulation
gibson-assembly
cloning-strategies
gel-electrophoresis
assembly-strategies
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Feb 6, 2021 - Jupyter Notebook
Biological sequences for the julia language
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Mar 21, 2021 - Julia
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Currently an X icon is used to mark any extinction types on the species population graph, and may create the impression that a species have gone extinct entirely even though it's only patch-specific. Would be nice if a unique icon is used to indicate that.