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blast

Here are 137 public repositories matching this topic...

mosuka / blast

Sponsor Star

Blast is a full text search and indexing server, written in Go, built on top of Bleve.

search go docker golang search-engine raft cluster grpc index blast restful-api

Updated Feb 5, 2021
Go

MMseqs2

soedinglab / MMseqs2

Star

MMseqs2: ultra fast and sensitive search and clustering suite

bioinformatics taxonomy metagenomics alignment sequence-clustering profile-search sequence-search linclust mmseqs blast

Updated Mar 17, 2021
C++

tanghaibao / jcvi

Star

Python library to facilitate genome assembly, annotation, and comparative genomics

bioinformatics genomics assembly blast comparative-genomics variant-calling synteny sequence-alignments genome-sequencing genetic-maps jcvi allmaps

Updated Feb 18, 2021
Python

ppbibo / PentesterSpecialDict

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渗透测试人员专用精简化字典 Dictionary for penetration testers happy hacker

dns dictionary boom fuzzing username blast passwords burp pentest hacker fuzz pentester burp-dict dns-dict domain-dict

Updated Mar 2, 2021
Python

seqan / seqan

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SeqAn's official repository.

high-performance cpp14 indexing simd alignment bwt fasta blast fastq-format bioinfomatics suffixarray sequence-alignments seqan htslib sam-bam

Updated Mar 10, 2021
C++

wurmlab / sequenceserver

Star

Open

bed or gff

yannickwurm commented Nov 19, 2020

We should enable a slightly-modified table output format that is gff or bed-like and can thus be more easily read into IGV

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good first issue

Open

Mixed sequence type notification should be sticky

Open

Improve IP/hostname detection on EC2

6

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seqan / seqan3

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Open

[DOC] cmake default without -O3 and order of args/options in cmake call

1

marehr commented Aug 10, 2020

Stefan Kurtz reported the following issue over our seqan-dev list:

I followed the description for the Cmake-setup and noticed in the example CMakeList.txt shown at the end of https://docs.seqan.de/seqan/3-master-user/setup.html that compiler optimization options such as -O3 is missing, which will lead to poor performance for users who do not recognize it.

I now use

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bug good first issue

williamgilpin / pypdb

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A Python API for the RCSB Protein Data Bank (PDB)

proteins pdb protein-data-bank protein-structure protein-sequences proteomics blast

Updated Jan 17, 2021
Python

seqan / lambda

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LAMBDA – the Local Aligner for Massive Biological DatA

bioinformatics high-performance cpp14 metagenomics alignment protein-sequences ncbi-taxonomy blast blast-searches seqan

Updated Feb 12, 2021
C++

drostlab / orthologr

Star

Genome wide orthology inference and dNdS estimation

r genomics species blast comparative-genomics proteome blast-searches orthology-inference comparative-genomics-studies sequence-alignments comparative dnds-estimation codon-alignment sequence-alignment biomartr entire-genomes orthologous-genes comparing-genomes genomics-studies retrieve-genomes

Updated Aug 10, 2020
R

aleimba / bac-genomics-scripts

Star

Collection of scripts for bacterial genomics

science unix opensource bioinformatics annotation genomics perl ngs sequencing computational-biology microbial-genomics blast microbiology mlst bioperl scripts-collection

Updated Dec 6, 2019
Perl

datasnakes / OrthoEvolution

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An easy to use and comprehensive python package which aids in the analysis and visualization of orthologous genes. 🐵

Updated Aug 21, 2020
Python

billzt / PrimerServer2

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PrimerServer2: a high-throughput primer design and specificity-checking platform

html5 thermodynamics blast d3js primer-design throughput-primer specific-primers

Updated Mar 18, 2021
Python

desmid / mview

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MView extracts and reformats the results of a sequence database search or multiple alignment.

bioinformatics perl extract fasta blast sourceforge pir blast-search ebi sanders msf bioinformatics-tool leroy clustal sequence-alignment-visualization mview

Updated Oct 20, 2020
Perl

anubhavanonymous / XLR8_BOMBER

Star

A Superfast SMS bomber for Linux And Termux !

hack sms hacking blast sms-api termux spammer kali-linux bomber smsbomber termux-tool termux-hacking termux-tools tbomb callbomber

Updated Mar 15, 2021
Shell

drostlab / metablastr

Star

Massive Scale BLAST Sequence Searches with R

protein species blast blast-searches nucleotide biological-sequences blasting blastn blast-search sequence-diversity biomartr blast-hits

Updated Feb 7, 2021
R

sing-group / biojs-vis-blasterjs

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BlasterJS - an open source JS library to display Blast results

javascript bootstrap npm blast biojs html2canvas blast-output-viewer

Updated Oct 18, 2019
JavaScript

Azure / azure-hpc

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Microsoft Azure HPC & Big Compute

bioinformatics research blast azure-storage blast-searches lifescience blastn blast-search azure-hpc

Updated Aug 18, 2019
JavaScript

NAL-i5K / genomics-workspace

Star

Open

Document file directories

hsiaoyi0504 opened Sep 26, 2018

good first issue

Open

Document of tests

1

Edinburgh-Genome-Foundry / genome_collector

Star

🌠 Easily download genomes and build BLAST/Bowtie indexes in Python

python bioinformatics synthetic-biology blast taxid ncbi bowtie synbio

Updated Nov 12, 2019
Python

wyim-pgl / DCBLAST

Star

Divide and Conquer BLAST: using grid engines to accelerate NCBI-BLAST+ and other sequence analysis tools

hpc cluster perl robust blast hpc-applications ncbi-blast grid-engine sequence-analysis grid-cloud plast hpc-blast

Updated Apr 26, 2020
Perl

hng / BiomolecularStructures.jl

Star

The BiomolecularStructures package provides several Bioinformatics-related modules for Julia.

bioinformatics pdb julia blast mafft

Updated Jun 13, 2017
Julia

widdowquinn / Teaching-IBioIC-Intro-to-Bioinformatics

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Course materials for the IBioIC Introduction to Bioinformatics training course

python bioinformatics structural-biology jupyter-notebook teaching blast mybinder uniprot teaching-materials bioinformatics-course

Updated Jun 4, 2017
HTML

widdowquinn / 2018-03-06-ibioic

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Teaching materials for 6-7th March 2018 delivery of introductory bioinformatics training course for IBioIC.

python bioinformatics jupyter-notebook teaching biopython blast uniprot teaching-materials

Updated Mar 12, 2018
HTML

Joseph7e / Assign-Taxonomy-with-BLAST

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Assign taxonomy with blast, can be used for qiime

ncbi-taxonomy blast qiime ncbi-database ncbi-blast taxonomy-assignment

Updated Nov 27, 2020
Python

BFL-lab / Mfannot

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MFannot is a program for the annotation of mitochondrial and plastid genomes

pipeline genome docker-container blast bioperl muscle mitochondrial hmmer erpin umac tbl2asn

Updated Feb 10, 2021
Perl

mtisza1 / Cenote-Taker

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Divergent Virus & Mobile Element Genome Annotation Pipeline

virus genome taxonomy metagenomics genbank circle genome-annotation hhblits blast orfs plasmid

Updated Mar 23, 2020
Shell

Zenleaf / entrez-rs

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A Rust wrapper around the Entrez API. Helps you access the Entrez API using idiomatic Rust. It also provides tools to parse the XML results from Entrez.

rust bioinformatics gene pubmed medical entrez blast ncbi biorust

Updated Nov 29, 2020
Rust

Lattice-Automation / repp

Star

Repository-based plasmid design

bioinformatics assembly dna blast repositories plasmid gibson

Updated Jan 29, 2020
Go

sparkblastproject / v2

Star

SparkBLAST is a parallelization of a sequence alignment application (BLAST) that employs cloud computing for the provisioning of computational resources and Apache Spark as the coordination framework. Here you will find suplementary material to the article entitled "SparkBLAST: Scalable BLAST processing using in-memory operations", submitted to the BMC Bioinformatics journal.

spark parallelization blast

Updated Jun 19, 2017
Java

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