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ggstatgen
ggstatgen commented Mar 12, 2019

Hi

I'm having problems to complete the first stage ('detection'). The code terminates with an exception.

A bit of info to help you diagnose the issue.

My command is as follows

python <CODE>/rMETL/rMETL.py detection -t 40 -x pacbio <DATA>/alignment/alignments.hg38hengli.ngmlr.sorted.bam <DATA>/REF/GRCh38_hengli_recommended/GCA_000001405.15_GRCh38_no_alt_analysis_set.fna <OUT>/rMETL <

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