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@Oshlack

Oshlack

Popular repositories

  1. splatter Public

    Simple simulation of single-cell RNA sequencing data

    R 152 49

  2. Lace Public

    Building SuperTranscripts: A linear representation of transcriptome data

    Python 63 19

  3. Corset Public

    Software for clustering de novo assembled transcripts and counting overlapping reads

    C++ 55 17

  4. STRetch Public

    Method for detecting STR expansions from short-read sequencing data

    Python 54 12

  5. JAFFA Public

    JAFFA is a multi-step pipeline that takes either raw RNA-Seq reads, or pre-assembled transcripts, then searches for gene fusions

    C++ 42 17

  6. Clinker Public

    Gene Fusion Visualiser

    Python 41 12

Repositories

  • splatter Public

    Simple simulation of single-cell RNA sequencing data

    R 152 GPL-3.0 49 8 1 Updated Jan 10, 2022
  • Rust 0 MIT 0 0 0 Updated Dec 17, 2021
  • STRetch Public

    Method for detecting STR expansions from short-read sequencing data

    Python 54 MIT 12 6 2 Updated Dec 15, 2021
  • speckle Public

    R package for specialised analysis of single cell data

    R 24 GPL-3.0 2 2 0 Updated Nov 28, 2021
  • Slinker Public

    Slinker offers a succinct and complementary method to visualise RNA-Seq data through superTranscripts.

    Python 12 MIT 1 1 0 Updated Nov 23, 2021
  • JAFFA Public

    JAFFA is a multi-step pipeline that takes either raw RNA-Seq reads, or pre-assembled transcripts, then searches for gene fusions

    C++ 42 17 7 1 Updated Nov 19, 2021
  • MINTIE Public

    Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.

    Python 24 MIT 6 0 0 Updated Nov 1, 2021
  • MINTIE-paper-analysis Public

    Code for generating the figures and analyses presented in the MINTIE paper

    R 0 MIT 1 0 0 Updated Oct 7, 2021
  • oshlack.github.io Public

    Oshlack Lab website

    JavaScript 2 2 0 1 Updated Sep 27, 2021
  • ALLSorts Public

    ALLSorts is a B-Cell Acute Lymphoblastic Leukemia (B-ALL) subtype classifier. From gene expression counts to over 18 subtypes.

    Python 9 MIT 2 0 0 Updated Aug 30, 2021

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