Data-driven Computational Modelling

pyPESTO Public
python Parameter EStimation TOolbox

Python 83 BSD-3-Clause 30 72 (4 issues need help) 5 Updated Jan 20, 2022
pyABC Public
distributed, likelihood-free inference

Python 114 BSD-3-Clause 36 45 4 Updated Jan 12, 2022
parPE Public
Parameter estimation for dynamical models using high-performance computing, batch and mini-batch optimizers, and dynamic load balancing.

C++ 13 MIT 4 62 (2 issues need help) 4 Updated Nov 29, 2021
model_calibration_protocol Public

Jupyter Notebook 1 BSD-3-Clause 0 0 0 Updated Nov 6, 2021
custom_ci_image Public
Testing custom CI image for parPE

Shell 0 0 0 0 Updated Oct 25, 2021
SPToolbox Public

MATLAB 0 BSD-3-Clause 0 1 0 Updated Jul 26, 2021
lookahead-study Public
Code for the pyABC dynamic look-ahead scheduling study

Jupyter Notebook 2 MIT 0 2 0 Updated Jun 18, 2021
tumor2d Public
Python bindings to a C++ implementation of the source code accompanying: Jagiella, Rickert, Theis, Hasenauer "Parallelization and high-performance computing enables automated statistical inference of multiscale models" (2017)

C++ 0 BSD-3-Clause 0 2 0 Updated Dec 6, 2020
solverstudy Public

Python 1 MIT 0 1 0 Updated Nov 23, 2020
CS_Signalling_ERBB_RAS_AKT Public
Model and data from FroehlichKes2018

Jupyter Notebook 1 MIT 0 3 0 Updated Jul 27, 2020

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