mackelab

Repositories

• sbi

  Simulation-based inference in PyTorch

  pytorch parameter-estimation bayesian-inference likelihood-free-inference simulation-based-inference
  Jupyter Notebook AGPL-3.0 35 171 34 (1 issue needs help) 3 Updated May 12, 2021

• pyknos

  don't regress

  density-estimation
  Python AGPL-3.0 3 10 7 0 Updated May 7, 2021

• sbibm

  Forked from sbi-benchmark/sbibm

  Simulation-based inference benchmark
  Python MIT 8 1 0 0 Updated May 5, 2021

• sinn
  Python MIT 1 0 6 0 Updated Apr 27, 2021

• mackelab-toolbox
  Python 1 0 0 0 Updated Apr 27, 2021

• theano_shim

  A simple interface to easily switch between using Theano and pure Numpy
  Python MIT 1 0 0 0 Updated Apr 27, 2021

• epiphyte

  Python toolkit for working with high-dimensional neural data recorded during naturalistic, continuous stimuli

  python docker movies database toolbox data-analysis data-pipelines
  Jupyter Notebook GPL-3.0 1 4 1 0 Updated Apr 7, 2021

• brian2

  Forked from brian-team/brian2

  Brian is a free, open source simulator for spiking neural networks.
  Python 168 0 0 0 Updated Feb 9, 2021

• pyloric

  Simulator of the pyloric network in cython.

  python simulator cython pyloric-network stomatogastric-ganglion
  Jupyter Notebook MIT 0 1 3 0 Updated Jan 24, 2021

• benchmarking_sbi_runs

  Raw results for Benchmarking SBI manuscript hosted on LFS
  0 0 0 0 Updated Jan 13, 2021

• DECODE
  Jupyter Notebook 1 2 0 0 Updated Dec 18, 2020

• IdentifyMechanisticModels_2020

  Code for "Training deep neural density estimators to identify mechanistic models of neural dynamics"
  Jupyter Notebook MIT 0 3 0 0 Updated Oct 19, 2020

• critical_retina

  Code and data for 'Signatures of criticality arise in simple neural populations models with correlations'
  MATLAB 0 2 0 0 Updated Sep 28, 2020

• sbi_joss

  SBI JOSS manuscript source
  TeX 0 0 0 0 Updated Jul 14, 2020

• autohmm

  Hidden Markov Models (HMMs) with tied states and autoregressive observations
  Python BSD-2-Clause 12 16 2 1 Updated Jul 10, 2020

• delfi

  Density estimation likelihood-free inference

  machine-learning neural-networks abc bayesian-inference density-estimation likelihood-free simulation-based-inference
  Python 25 64 2 0 Updated Jul 3, 2020

• gp-maps-python

  Gaussian process method for inferring cortical maps (Python version)

  machine-learning computational-neuroscience
  Python GPL-3.0 2 1 0 0 Updated Jun 23, 2020

• mesoGIF
  Jupyter Notebook 1 1 0 2 Updated Jun 6, 2020

• nflows

  Forked from bayesiains/nflows

  Normalizing flows in PyTorch

  density-estimation normalizing-flows
  Python 48 0 2 0 Updated Apr 6, 2020

• nflows-nofork

  Normalizing flows in PyTorch

  pytorch density-estimation
  Python 0 0 0 0 Updated Mar 23, 2020

• snl

  Forked from mnonnenm/SNL_py3port

  Python 3 port of SNL
  Python MIT 2 0 0 0 Updated Feb 19, 2020

• CorBinian

  CorBinian: A toolbox for modelling and simulating high-dimensional binary and count-data with correlations

  count correlation entropy binary high-dimensional-data maxent heat-capacity
  MATLAB BSD-2-Clause 4 14 1 0 Updated Feb 14, 2020

• dg_python

  Dichotomized Gaussian model implemented in python
  Jupyter Notebook 3 1 0 0 Updated Sep 26, 2019

• acm2017_abc

  Forked from diadochos/acm2017_abc

  Approximate Bayesian Computation (Applied Cognitive Modeling course 2017)
  Jupyter Notebook GPL-3.0 2 0 0 0 Updated Jun 21, 2019

• engine

  Forked from LFITaskForce/engine

  A Generic Framework for Likelihood-Free Inference
  MIT 3 0 0 0 Updated Jun 20, 2019

• apt_icml

  Anonymized code for ICML 2019 submission
  Python 1 2 0 0 Updated May 14, 2019

• S3ID

  subspace identficiation for partially observed high-dimensional data
  Python BSD-2-Clause 2 4 0 0 Updated May 15, 2018

• open-comp-neuro

  A first start as a resource for pooling lecture materials for computational neuroscience course
  Jupyter Notebook MIT 0 1 0 0 Updated Mar 6, 2018

• DeepSpike
  Jupyter Notebook 2 7 2 0 Updated Feb 20, 2018

• multispike_tempotron

  To identify features by aggregate-label learning in spiking neurons
  Jupyter Notebook 1 12 0 1 Updated Feb 19, 2018