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17 public repositories
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SeqAn's official repository.
FastQC port to Qt5: A quality control tool for high throughput sequence data.
A secure encryption tool for genomic data
Parse and process FASTA and FASTQ formatted files of biological sequences.
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Updated
Aug 16, 2020
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Julia
Ultra Fast NGS Data QC Tool
Datastores for reads, not your papa's FASTQ files.
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Updated
Jun 7, 2020
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Julia
Binary representation of fastq files
fxtools: light-weight processing tool for FASTA/FASTQ/BAM format data
Illumina (and SOLiD) sensitive read mapping tool (cloned from svn://scm.gforge.inria.fr/svnroot/storm/)
FLiCK - Format LeveragIng Compression frameworK
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Dec 22, 2017
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Java
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Oct 26, 2018
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Python
Lossless compression of FASTQ sequences.
fdemux is a FASTA/FASTQ demultiplexer with support for (arbitrarily) fuzzy barcode matching, asymmetric barcoding, and parallel processing.
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Updated
Sep 11, 2018
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Python
simple and convenient program to convert fasta sequences to fastq sequences
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Updated
May 13, 2020
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Shell
Hadoop Sequence Parser (HSP)
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When working with very large SAM files it is often convenient to remove sequence and quality information to reduce storage and improve I/O.
Following from this it would be convenient to have a
stripSeqQualfunction that replaces the two fields with*.