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29 public repositories
matching this topic...
SeqAn's official repository.
Accurate, resource-frugal and deterministic DNA sequence classifier.
Updated
Jul 2, 2020
Python
msufsort parallel suffix array construction algorithm
Experimental parallel compression algorithm
BWT, FM-index and bits vector for analyzing DNA sequence data.
Updated
Sep 12, 2017
Rust
Burrows-Wheeler Transform and FM-index in golang
Generalized enhanced suffix array construction in external memory [CPM'13, AMB 2017]
novel high throughput entropy encoder for BWT data
fast classification of metagenomic sequences with lightweight de Bruijin graph-based reference indexing
Space-efficient variable-order Markov models
gsufsort: building suffix arrays, LCP-arrays and BWTs for string collections
An attempt to compress the enwik8 file
Reversible permutation of the characters of a string, which can be used for lossless data compression based on block sorting.
Updated
Jul 22, 2018
Python
The final project in my undergraduate life, a data compressor based on BWT, MTF and Huffman-coding.
Text Compression is a program that compresses the physical size of text file (txt pdf etc) using Huffman, BWT and MTF. These three algorithms are combined in different sequences to check which combination does the most compression.
Python C module for creating suffix, LCP and BWT arrays with UTF-8 text.
Computational Biology Assignments
Updated
Dec 21, 2017
Python
Parallel external memory construction of BWT from SA
I along my project partner was given "Text Compression" as a final lab task. We were asked to combine 3 algorithms, huffman, BWT, MTF, in different orders to check which order does the most compression.
Updated
Apr 26, 2018
Java
compression, decompression and search for algorithom Burrows-Wheeler Transform(BWT)
A file compression tool that implements BWT, MTF, LZW algorithms
Accelerating lossless compression algorithms.
Solutions for information theory homeworks course (ITMO 2016)
Updated
Jan 13, 2018
HTML
DNA Sequencing 1 Top Coder Data Science Marathon Match
The ultimate BWT-based file compressor
Splice-aware Tool for Alignment of Pyrosequencing Reads
python3 implementation of BWT and FM-index
Updated
Apr 10, 2018
Python
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